PROJECT INFORMATION
GOLD Project ID
Gp0504401  
Project Name
Lactobacillus parakefiri DSM 10551  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Lactobacillus parakefiri strain:DSM 10551
NCBI BioProject ID 434396
NCBI BioProject Accession PRJNA434396
NCBI Locus Tag
C5L28  
NCBI BioSample Accession SAMN08556539
PI
Added By JGI automated process on 2020-08-24
Last Modified By
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Industrial
Sequencing Center Carlsberg Research Laboratory
Collaborating Institute
  
Funding Agency
  
Project Description
Genome sequencing of Lactobacillus parakefiri DSM 10551  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Applied microbiology and biotechnology 103(7):3135-3152 Uncovering carbohydrate metabolism through a genotype-phenotype association study of 56 lactic acid bacteria genomes.

Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Genome sequencing of Lactobacillus parakefiri DSM 10551
Organism Lactobacillus parakefiri DSM 10551
Analysis Projects Lactobacillus parakefiri DSM 10551
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0123340
Organism Name
Lactobacillus parakefiri DSM 10551  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Lactobacillus  
Genus Synonyms
  
Species
Lactobacillus parakefiri  
Subspecies
  
Species Synonyms
  
Strain
DSM 10551  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 10551  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.5414  
Exemplar Name
Lactobacillus parakefiri  
Taxon DOI
10.1601/tx.5414  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1423787
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Bacilli  
NCBI Order
Lactobacillales  
NCBI Family
Lactobacillaceae  
NCBI Genus
Lentilactobacillus  
NCBI Species
Lactobacillus parakefiri  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Food production  
Ecosystem Type
Fermented beverages  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Facultative anaerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
0.5-1.2 µm  
Cell Length
1.0-3.5 µm  
Color
White  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Pairs
Chains
Diseases
  
Known Habitats Milk
Fermented food product
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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