PROJECT INFORMATION
GOLD Project ID
Gp0504223  
Project Name
Methanofervidicoccus abyssi HHB  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Methanofervidicoccus abyssi
NCBI BioProject ID 520752
NCBI BioProject Accession PRJDB6741
NCBI Locus Tag
MHHB  
NCBI BioSample Accession SAMD00112196
PI
Added By JGI automated process on 2020-08-24
Last Modified By
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Environmental
Sequencing Center Japan Agency for Marine-Earth Science and Technology (Japan)
Collaborating Institute
  
Funding Agency
  
Project Description
Genome sequencing of Methanofervidicoccus abyssi HHB  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications International Journal of Systematic and Evolutionary Microbiology 69(4):1225-1230 Methanofervidicoccus abyssi gen. nov., sp. nov., a hydrogenotrophic methanogen, isolated from a hydrothermal vent chimney in the Mid-Cayman Spreading Center, the Caribbean Sea.

Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Genome sequencing of Methanofervidicoccus abyssi HHB
Organism Methanofervidicoccus abyssi HHB
Analysis Projects Methanofervidicoccus abyssi HHB
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina MiSeq
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0551949
Organism Name
Methanofervidicoccus abyssi HHB  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
ARCHAEAL  
Phylogeny
EURYARCHAEOTA-METHANOCOCCI  
Genus
Methanofervidicoccus  
Genus Synonyms
  
Species
Methanofervidicoccus abyssi  
Subspecies
  
Species Synonyms
  
Strain
HHB  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 2082189
NCBI Superkingdom
Archaea  
NCBI Kingdom
  
NCBI Phylum
Euryarchaeota  
NCBI Class
Methanococci  
NCBI Order
Methanococcales  
NCBI Family
  
NCBI Genus
Methanofervidicoccus  
NCBI Species
Methanofervidicoccus abyssi  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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