Studies
|
52,460 |
|
Biosamples
|
170,231 |
|
Sequencing Projects
|
472,569 |
|
Analysis Projects
|
360,348 |
| Organisms | 460,444 |
| PROJECT INFORMATION | |
|---|---|
|
GOLD Project ID
|
Gp0496517
|
|
Project Name
|
Botrimarina mediterranea Spa11
|
|
Other Names
|
|
|
Legacy GOLD ID
|
|
| NCBI BioProject Name | Botrimarina mediterranea Spa11 genome sequencing |
|
NCBI BioProject Accession
|
PRJNA485700 |
|
NCBI Locus Tag
|
Spa11
|
|
NCBI BioSample Accession
|
SAMN10953901 |
| PI | |
| Added By |
JGI automated process
on 2020-07-06 |
| Last Modified By |
Mahathi Kandimalla
on 2021-03-01 |
| Project Comments |
|
|
Project Status
|
Complete and Published
|
|
Project Relevance
|
Environmental |
|
Sequencing Center
|
Radboud University Nijmegen
(Netherlands)
|
|
Collaborating Institute
|
|
|
Funding Agency
|
|
|
Project Description
|
Botrimarina mediterranea Spa11 genome sequencing
|
| Is JGI Project |
No
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
|
JGI Data Utilization Status
|
|
|
JGI Award DOI
|
|
|
Genome Publications
|
|
|
Other Publications
|
|
|
Ignored Publications
|
|
|
Unassigned Publications
|
Antonie van Leeuwenhoek
Three marine strains constitute the novel genus and species Crateriforma conspicua in the phylum Planctomycetes.
Antonie van Leeuwenhoek Description of the novel planctomycetal genus Bremerella, containing Bremerella volcania sp. nov., isolated from an active volcanic site, and reclassification of Blastopirellula cremea as Bremerella cremea comb. nov. |
| SRA Experiment |
|
| PROJECT COMPOSITION | |
| Study |
Planctomycetes strains from diverse aquatic habitats - Genome sequencing and assembly |
| Organism |
Botrimarina mediterranea Spa11 |
| Analysis Projects |
Botrimarina mediterranea Spa11 |
| Number of Analysis Projects (AP) |
1 |
| Number of Derived Analyis Projects (DAP) |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 6: Finished |
|
Finishing Goal
|
|
|
Contamination Screening Input
|
|
|
DNA Amplification Method
|
|
|
Single Cell Lysis Protocol
|
|
|
Single Cell Lysis Approach
|
|
|
Sequencing Comments
|
|
|
DNA Amplification Kit
|
|
|
Sequencing Technology
(MIGS-29)
|
Illumina MiSeq |
|
Library Method
(MIGS-28)
|
|
|
Library Layout
|
|
|
Library Screening Method
|
|
|
Number Of Reads
|
|
|
Read Size
|
|
|
Vector
|
|
| GC Percent |
|
| Chromosome Count |
|
| Plasmid Count |
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0545583 |
| Organism Name |
Botrimarina mediterranea Spa11
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
PLANCTOMYCETES
|
| Genus |
Botrimarina
|
| Genus Synonyms |
|
| Species |
Botrimarina mediterranea
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
Spa11
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
|
| Type Strain |
|
| Exemplar DOI |
|
| Exemplar Name |
|
| Taxon DOI |
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
2528022 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Planctomycetes
|
| NCBI Class |
Planctomycetia
|
| NCBI Order |
Pirellulales
|
| NCBI Family |
Lacipirellulaceae
|
| NCBI Genus |
Botrimarina
|
| NCBI Species |
Botrimarina mediterranea
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
|
| Ecosystem Category |
|
| Ecosystem Type |
|
| Ecosystem Subtype |
|
| Specific Ecosystem |
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
|
| Genbank 16S ID |
|
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
|
| Cell Shape |
|
| Motility |
|
| Sporulation |
|
| Temperature Range |
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| Salinity |
|
| pH |
|
| Cell Diameter |
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| Cell Length |
|
| Color |
|
| Gram Staining |
|
| Biotic Relationships |
|
| Symbiotic Physical Interaction |
|
| Symbiotic Relationship |
|
| Symbiont Name |
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
|
| Diseases |
|
| Known Habitats |
|
| Metabolisms |
|
| Phenotypes |
|
| Energy Sources |
|
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