PROJECT INFORMATION
GOLD Project ID
Gp0491364  
Project Name
Marinobacterium sp. LSUCC0821  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Marinobacterium sp. LSUCC0821 genome sequencing
NCBI BioProject ID 589095
NCBI BioProject Accession PRJNA589095
NCBI Locus Tag
HH196  
NCBI BioSample Accession SAMN13266633
PI
Added By JGI automated process on 2020-07-02
Last Modified By JGI automated process on 2020-07-03
Project Comments
  
Project Status
Complete and Published  
Project Relevance Environmental
Sequencing Center University of Southern California (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Marinobacterium sp. LSUCC0821 genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX7132694  (Link to NCBI )
Experiment Title Genome sequencing of strain LSUCC0821
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection PCR
Library Name LSUCC0821_nanopore
Library Layout SINGLE
Library Instrument MIN_ION
 
SRA Experiment Id SRX7132693  (Link to NCBI )
Experiment Title Genome sequencing of strain LSUCC0821
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection PCR
Library Name LSUCC0821_illumina
Library Layout PAIRED
Library Instrument NEXT_SEQ_550
PROJECT COMPOSITION
Study Marinobacterium sp. LSUCC0821 genome sequencing
Organism Marinobacterium sp. LSUCC0821
Analysis Projects Marinobacterium sp. LSUCC0821
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Oxford Nanopore MiniION
Illumina NextSeq
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0540521
Organism Name
Marinobacterium sp. LSUCC0821  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Marinobacterium  
Genus Synonyms
  
Species
Marinobacterium sp. LSUCC0821  
Subspecies
  
Species Synonyms
  
Strain
LSUCC0821  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 2668067
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Oceanospirillales  
NCBI Family
Oceanospirillaceae  
NCBI Genus
Marinobacterium  
NCBI Species
Marinobacterium sp. LSUCC0821  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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