PROJECT INFORMATION
GOLD Project ID
Gp0490512  
Project Name
Iamiaceae bacterium SCSIO 58843  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Iamiaceae bacterium SCSIO 58843 genome sequencing
NCBI BioProject Accession PRJNA587362
NCBI Locus Tag
GH723  
NCBI BioSample Accession SAMN13189415
Source Sample ID
PI Unknown
Added By JGI automated process on 2020-07-02
Last Modified By Mahathi Kandimalla on 2021-01-27
Project Comments
  
Project Status
Complete and Published  
Project Relevance Environmental
Sequencing Center south china sea institute of oceanology
Collaborating Institute
  
Funding Agency
  
Project Description
Iamiaceae bacterium SCSIO 58843 genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications International journal of systematic and evolutionary microbiology: 70(6):3852-3858 , isolated from South China Sea sediment environments.
PubMed: 32501198 DOI: 10.1099/ijsem.0.004251
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Iamiaceae bacterium SCSIO 58843 genome sequencing
Organism Iamiaceae bacterium SCSIO 58843
Analysis Projects Iamiaceae bacterium SCSIO 58843
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
73  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0539672
Organism Name
Iamiaceae bacterium SCSIO 58843  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
  
Genus Synonyms
  
Species
Iamiaceae bacterium SCSIO 58843  
Subspecies
  
Species Synonyms
  
Strain
SCSIO 58843  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
SCSIO 58843  
Type Strain
Yes  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 2789776
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinomycetota  
NCBI Class
Acidimicrobiia  
NCBI Order
Acidimicrobiales  
NCBI Family
Iamiaceae  
NCBI Genus
Actinomarinicola  
NCBI Species
Actinomarinicola tropica  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Sediment  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
  
Salinity
Halophile  
pH
6  
Cell Diameter
  
Cell Length
1.0–2.0 µm  
Color
Cream  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Sediment
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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