PROJECT INFORMATION
GOLD Project ID
Gp0489988  
Project Name
Vagococcus sp. HDW17A  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name
  
NCBI BioProject ID 609871
NCBI BioProject Accession PRJNA609871
NCBI Locus Tag
  
NCBI BioSample Accession SAMN14260687
PI Dong-Wook Hyun
Added By Dong-Wook Hyun on 2020-05-19
Last Modified By JGI automated process on 2020-05-21
Project Comments
  
Project Status
Complete and Published  
Project Relevance
  
Sequencing Center Kyunghee University (South Korea)
Collaborating Institute
  
Funding Agency
  
Project Description
Genome analysis of Vagococcus sp. HDW17A, isolated from Cybister lewisianus  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Genome analysis of Vagococcus sp. HDW17A, isolated from Cybister lewisianus
Organism Vagococcus sp. HDW17A
Analysis Projects Vagococcus sp. HDW17A
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) PacBio RSII
PacBio RS II
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
1  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0539171
Organism Name
Vagococcus sp. HDW17A  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Vagococcus  
Genus Synonyms
  
Species
Vagococcus sp. HDW17A  
Subspecies
  
Species Synonyms
  
Strain
HDW17A  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
JCM 33682  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 2714946
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Bacilli  
NCBI Order
Lactobacillales  
NCBI Family
Enterococcaceae  
NCBI Genus
Vagococcus  
NCBI Species
Vagococcus sp. HDW17A  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Insecta  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Intestine  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Salinity
  
pH
6  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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