PROJECT INFORMATION
GOLD Project ID
Gp0489725  
Project Name
Veillonella caviae DSM 20738  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Whole-Genome Sequence of Veillonella sp.
NCBI BioProject ID 506647
NCBI BioProject Accession PRJNA506647
NCBI Locus Tag
EO120  
NCBI BioSample Accession SAMN10465590
PI
Added By JGI automated process on 2020-04-15
Last Modified By
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Medical
Sequencing Center Institut Pasteur (France)
Collaborating Institute
  
Funding Agency
  
Project Description
Whole-Genome Sequence of Veillonella sp.  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX5189917  (Link to NCBI )
Experiment Title Whole genome of Veillonella sp from human clinical samples
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Veillonella 161-207
Library Layout PAIRED
Library Instrument NEXT_SEQ_500
PROJECT COMPOSITION
Study Whole-Genome Sequences of Veillonella sp. from human clinical samples and type strains of Veillonella validated species
Organism Veillonella caviae DSM 20738
Analysis Projects Veillonella caviae DSM 20738
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina NextSeq
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0026909
Organism Name
Veillonella caviae DSM 20738  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Veillonella  
Genus Synonyms
  
Species
Veillonella caviae  
Subspecies
  
Species Synonyms
  
Strain
DSM 20738  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 20738  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.4454  
Exemplar Name
Veillonella caviae  
Taxon DOI
10.1601/tx.4454  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 248316
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Negativicutes  
NCBI Order
Veillonellales  
NCBI Family
Veillonellaceae  
NCBI Genus
Veillonella  
NCBI Species
Veillonella caviae  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Mammals  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID AY355140
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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