PROJECT INFORMATION
GOLD Project ID
Gp0481059  
Project Name
Metatranscriptome of Laccaria bicolor mycelium from Champenoux, France - NUTRR7  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Metatranscriptome of Laccaria bicolor mycelium from Champenoux, France - NUTRR7
NCBI BioProject ID 697467
NCBI BioProject Accession PRJNA697467
NCBI Locus Tag
JOP13  
NCBI BioSample Accession SAMN17674503
PI Francis M. Martin
Added By JGI automated process on 2020-03-17
Last Modified By JGI automated process on 2021-01-29
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Metatranscriptome of Laccaria bicolor mycelium from Champenoux, France; compartmented petri dish containing on both sides a solid MS/20 modified medium at 1,8% Bactoagar and 15mM of KNO3  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid RNA
Sequencing Strategy
Metatranscriptome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX10045543  (Link to NCBI )
Experiment Title Laccaria-Populus Phosphate Effects ectomycorrhizae Metatranscriptome
Exp Library Strategy OTHER
Library Source METATRANSCRIPTOMIC
Library Selection RT-PCR
Library Name GXXBU
Library Layout PAIRED
PROJECT COMPOSITION
Study Mycorrhizal fungal microbial communities from various locations for deep transcriptomics studies
Biosample Laccaria bicolor mycelium from Champenoux, France - NUTRR7
Analysis Projects
  
Number of Analysis Projects (AP) 0
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina NovaSeq S4
Library Method (MIGS-28)
Illumina RNASeq w/PolyA Selection, Plates  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Laccaria bicolor mycelium from Champenoux, France - NUTRR7
Other Names (alias, synonyms, short names)
  
Sample Description
Laccaria bicolor mycelium from Champenoux, France; compartmented petri dish containing on both sides a solid MS/20 modified medium at 1,8% Bactoagar and 15mM of KNO3  
SAMPLE TAXONOMY
NCBI Taxonomy ID 1670606
GOLD CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Lab enrichment  
Ecosystem Type
Defined media  
Ecosystem Subtype
  
Specific Ecosystem
  

 

 

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