PROJECT INFORMATION
GOLD Project ID
Gp0477308  
Project Name
Shewanella sp. TC10  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Shewanella sp. TC10 Genome sequencing
NCBI BioProject ID 553705
NCBI BioProject Accession PRJNA553705
NCBI Locus Tag
  
NCBI BioSample Accession SAMN12259770
PI Maëlle Molmeret
Added By Maëlle Molmeret on 2020-02-04
Last Modified By Galina Ovchinnikova on 2020-05-22
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Environmental
Sequencing Center Molecular Research LP (MR DNA)
Collaborating Institute
  
Funding Agency
  
Project Description
Shewanella sp. TC10 Genome analysis  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Frontiers in microbiology Multispecies Biofilm Development of Marine Bacteria Implies Complex Relationships Through Competition and Synergy and Modification of Matrix Components.

Other Publications Microbial ecology 68(1):94-110 Identification of bacterial strains isolated from the Mediterranean Sea exhibiting different abilities of biofilm formation.

Frontiers in microbiology Phenotypic Heterogeneity in Attachment of Marine Bacteria toward Antifouling Copolymers Unraveled by AFM.

SRA Experiment
 
SRA Experiment Id SRX7710523  (Link to NCBI )
Experiment Title Shewanella sp. TC10 Genome
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM PCR
Library Name 419739
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
PROJECT COMPOSITION
Study Shewanella sp. TC10
Organism Shewanella sp. TC10
Analysis Projects Shewanella sp. TC10
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 4: Annotation-Directed
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500
Illumina HiSeq
Library Method (MIGS-28)
Illumina fragmentation method  
Number Of Reads
  
Read Size
472  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0531756
Organism Name
Shewanella sp. TC10  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Shewanella  
Genus Synonyms
  
Species
Shewanella sp. TC10  
Subspecies
  
Species Synonyms
  
Strain
TC10  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1419739
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Alteromonadales  
NCBI Family
Shewanellaceae  
NCBI Genus
Shewanella  
NCBI Species
Shewanella sp. TC10  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Coastal  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
Rod-shaped  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Filaments
Diseases Undefined
Known Habitats Sea water
Metabolisms Undefined
Phenotypes Undefined
Energy Sources Undefined

 

 

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