PROJECT INFORMATION
GOLD Project ID
Gp0472381  
Project Name
Metatranscriptome of Chicken small intestine microbial community from Willmar, Minnesota, USA - 6W_C2  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Metatranscriptome of Chicken small intestine microbial community from Willmar, Minnesota, USA
NCBI BioProject ID 310100
NCBI BioProject Accession PRJNA310100
NCBI Locus Tag
  
NCBI BioSample Accession SAMN04447681
PI
Added By JGI automated process on 2020-01-24
Last Modified By
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Agricultural
Sequencing Center University of Minnesota (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Metatranscriptome of Chicken small intestine microbial community from Willmar, Minnesota, USA  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid RNA
Sequencing Strategy
Metatranscriptome  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX1554187  (Link to NCBI )
Experiment Title RNA-Seq of viral metagenome: broiler chicken small intestine: Sample 6W_C2
Exp Library Strategy RNA_SEQ
Library Source METAGENOMIC
Library Selection RANDOM
Library Name 6W_C2
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
PROJECT COMPOSITION
Study Chicken small intestine microbial community from Willmar, Minnesota, USA
Biosample Chicken small intestine microbial community from Willmar, Minnesota, USA - 6W_C2
Analysis Projects Metatranscriptome of Chicken small intestine microbial community from Willmar, Minnesota, USA - 6W_C2
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2000
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Chicken small intestine microbial community from Willmar, Minnesota, USA - 6W_C2
Other Names (alias, synonyms, short names)
  
Sample Description
Chicken small intestine microbial community from Willmar, Minnesota, USA  
SAMPLE TAXONOMY
NCBI Taxonomy ID
GOLD CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Birds  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Small intestine  
Specific Ecosystem
  

 

 

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