PROJECT INFORMATION
GOLD Project ID
Gp0471806  
Project Name
Human skin viral community from New Haven, Connecticut, USA - Wart IV_healthy  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Metagenome sequencing of Human skin microbial community from New Haven, Connecticut, USA
NCBI BioProject Accession PRJNA396064
NCBI Locus Tag
  
NCBI BioSample Accession SAMN08296208
PI
Added By JGI automated process on 2020-01-24
Last Modified By Supratim Mukherjee on 2021-11-05
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Medical
Sequencing Center National Cancer Institute (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Metagenome sequencing of Human skin viral community from New Haven, Connecticut, USA  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications mSphere Metagenomic Discovery of 83 New Human Papillomavirus Types in Patients with Immunodeficiency.

SRA Experiment
 
SRA Experiment Id SRX3534163  (Link to NCBI )
Experiment Title MiSeq of human metagenome:Biopsy of wart from sample 4
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection RANDOM
Library Name Wart IV
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
PROJECT COMPOSITION
Study Human microbial community from USA and Italy
Biosample Human skin viral community from New Haven, Connecticut, USA - Wart IV_healthy
Analysis Projects Human skin microbial community from New Haven, Connecticut, USA - Wart IV_healthy
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina MiSeq
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Human skin viral community from New Haven, Connecticut, USA - Wart IV_healthy
Other Names (alias, synonyms, short names)
  
Sample Description
Human skin viral community from New Haven, Connecticut, USA - healthy host  
SAMPLE TAXONOMY
NCBI Taxonomy ID
GOLD CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Mammals: Human  
Ecosystem Type
Benign tumor  
Ecosystem Subtype
Wart  
Specific Ecosystem
Tissue  

 

 

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