PROJECT INFORMATION
GOLD Project ID
Gp0468507  
Project Name
Opitutaceae bacterium TAV4  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Opitutaceae bacterium TAV4
NCBI BioProject ID 321367
NCBI BioProject Accession PRJNA321367
NCBI Locus Tag
  
NCBI BioSample Accession SAMN04992813
PI Jorge L. Rodrigues
Added By Jagadish Sundaramurthi on 2020-01-23
Last Modified By Supratim Mukherjee on 2020-01-30
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center University of Texas, Arlington
Collaborating Institute
  
Funding Agency
  
Project Description
Opitutaceae bacterium TAV4 genome sequencing and assembly isolated from termite, University of Texas, Arlington, USA  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Microbiol Resour Announc Analysis of Their Polysaccharide-Degrading Enzymes.

Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX1770674  (Link to NCBI )
Experiment Title Opitutaceae bacterium TAV4 Library
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name MKJR2
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
 
SRA Experiment Id SRX6897790  (Link to NCBI )
Experiment Title Opitutaceae bacterium TAV4 Genome sequencing and assembly, Sep 24 '19
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection size fractionation
Library Name MKJRJL2
Library Layout SINGLE
PROJECT COMPOSITION
Study Opitutaceae bacterium TAV4 genome
Organism Opitutaceae bacterium TAV4
Analysis Projects Opitutaceae bacterium TAV4
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina MiSeq
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0007972
Organism Name
Opitutaceae bacterium TAV4  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
VERRUCOMICROBIA  
Genus
  
Genus Synonyms
  
Species
Opitutaceae bacterium TAV4  
Subspecies
  
Species Synonyms
  
Strain
TAV4  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 2006848
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Verrucomicrobia  
NCBI Class
Opitutae  
NCBI Order
Opitutales  
NCBI Family
Opitutaceae  
NCBI Genus
  
NCBI Species
Opitutaceae bacterium  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Arthropoda  
Ecosystem Type
Ant  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Coccus-shaped  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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