PROJECT INFORMATION
GOLD Project ID
Gp0460411  
Project Name
Metatranscriptome of Salt-marsh sediments microbial community from Shanghai, China - Pa -SSU  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Metatranscriptome of Diverse samples microbial community from Shanghai, China
NCBI BioProject ID 361203
NCBI BioProject Accession PRJNA361203
NCBI Locus Tag
  
NCBI BioSample Accession SAMN06227040
PI
Added By JGI automated process on 2019-11-08
Last Modified By
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center Fudan University (China)
Collaborating Institute
  
Funding Agency
  
Project Description
Metatranscriptome of Diverse samples microbial community from Shanghai, China  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid RNA
Sequencing Strategy
Metatranscriptome  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX2488374  (Link to NCBI )
Experiment Title RNA-seq of Pa sediments: SSU rRNA
Exp Library Strategy RNA_SEQ
Library Source METATRANSCRIPTOMIC
Library Selection RANDOM
Library Name Pa_SSU
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
PROJECT COMPOSITION
Study Diverse samples microbial community from Shanghai, China
Biosample Salt-marsh sediments microbial community from Shanghai, China - Pa -SSU
Analysis Projects Metatranscriptome of Salt-marsh sediments microbial community from Shanghai, China - Pa -SSU
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina MiSeq
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Salt-marsh sediments microbial community from Shanghai, China - Pa -SSU
Other Names (alias, synonyms, short names)
  
Sample Description
  
SAMPLE TAXONOMY
NCBI Taxonomy ID
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Intertidal zone  
Specific Ecosystem
Salt marsh  

 

 

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