PROJECT INFORMATION
GOLD Project ID
Gp0460407  
Project Name
Metatranscriptome of Mangrove sediment microbial community from Mandovi, Goa, India - A1  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Metatranscriptome of Mangrove sediment microbial community from Goa, India
NCBI BioProject ID 408061
NCBI BioProject Accession PRJNA408061
NCBI Locus Tag
  
NCBI BioSample Accession SAMN07344470
PI
Added By JGI automated process on 2019-11-08
Last Modified By
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Environmental
Sequencing Center Goa University
Collaborating Institute
  
Funding Agency
  
Project Description
Metatranscriptome of Mangrove sediment microbial community from Goa, India  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid RNA
Sequencing Strategy
Metatranscriptome  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX3008178  (Link to NCBI )
Experiment Title A1
Exp Library Strategy RNA_SEQ
Library Source METATRANSCRIPTOMIC
Library Selection PCR
Library Name A1_metatranscriptome
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
PROJECT COMPOSITION
Study Mangrove sediment microbial community from Goa, India
Biosample Mangrove sediment microbial community from Mandovi, Goa, India - A1
Analysis Projects Metatranscriptome of Mangrove sediment microbial community from Mandovi, Goa, India - A1
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Mangrove sediment microbial community from Mandovi, Goa, India - A1
Other Names (alias, synonyms, short names)
  
Sample Description
  
SAMPLE TAXONOMY
NCBI Taxonomy ID
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Intertidal zone  
Specific Ecosystem
Mangrove swamp  

 

 

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