PROJECT INFORMATION
GOLD Project ID
Gp0454167  
Project Name
Sporosarcina sp. JAI121  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Sporosarcina sp. JAI121
NCBI BioProject ID 616800
NCBI BioProject Accession PRJNA616800
NCBI Locus Tag
HDC33  
NCBI BioSample Accession SAMN14515319
PI Javier A. Izquierdo
Added By JGI automated process on 2019-09-20
Last Modified By JGI automated process on 2020-04-01
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Genome sequencing of plant growth-promoting bacteria from the rhizosphere  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX8889683  (Link to NCBI )
Experiment Title Sporosarcina sp. JAI121
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name GTNZB
Library Layout PAIRED
Library Instrument Illumina NovaSeq 6000
PROJECT COMPOSITION
Study Plant growth-promoting bacteria from the rhizosphere of the beachgrass Ammophila breviligulata
Organism Sporosarcina sp. JAI121
Analysis Projects Sporosarcina sp. JAI121
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina NovaSeq
Illumina NovaSeq S4
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Tubes  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0527281
Organism Name
Sporosarcina sp. JAI121  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Sporosarcina  
Genus Synonyms
  
Species
Sporosarcina sp. JAI121  
Subspecies
  
Species Synonyms
  
Strain
JAI121  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 2723064
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Bacilli  
NCBI Order
Bacillales  
NCBI Family
Planococcaceae  
NCBI Genus
Sporosarcina  
NCBI Species
Sporosarcina sp. JAI121  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Rhizosphere  
Ecosystem Subtype
Soil  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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