PROJECT INFORMATION
GOLD Project ID
Gp0453816  
Project Name
Metatranscriptome of Anaeromyces robustus S4 x Methanobacterium bryantii co-culture from UC Santa Barbara, California, United States - C16D5  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name
  
NCBI BioProject ID
NCBI BioProject Accession
NCBI Locus Tag
  
NCBI BioSample Accession
PI Michelle O'Malley
Added By JGI automated process on 2019-09-19
Last Modified By JGI automated process on 2019-09-19
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Metatranscriptome of Anaeromyces robustus S4 x Methanobacterium bryantii co-culture on reed canary grass substrate  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid RNA
Sequencing Strategy
Metatranscriptome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Determining the genomic basis for interactions between gut fungi and methanogenic archaea
Biosample Anaeromyces robustus S4 x Methanobacterium bryantii co-culture from UC Santa Barbara, California, United States - C16D5
Analysis Projects
  
Number of Analysis Projects 0
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status In progress
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina NovaSeq
Library Method (MIGS-28)
Illumina Low Input RNASeq w/PolyA Selection, Tubes; Illumina RNASeq w/PolyA Selection, Tubes  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Anaeromyces robustus S4 x Methanobacterium bryantii co-culture from UC Santa Barbara, California, United States - C16D5
Other Names (alias, synonyms, short names)
  
Sample Description
Anaeromyces robustus S4 x Methanobacterium bryantii co-culture on reed canary grass substrate  
SAMPLE TAXONOMY
NCBI Taxonomy ID 1670606
GOLD CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Lab enrichment  
Ecosystem Type
Defined media  
Ecosystem Subtype
  
Specific Ecosystem
  

 

 

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