PROJECT INFORMATION
GOLD Project ID
Gp0453809  
Project Name
Metatranscriptome of Anaeromyces robustus S4 x Methanobacterium bryantii co-culture from UC Santa Barbara, California, United States - C9D4  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Metatranscriptome of Anaeromyces robustus S4 x Methanobacterium bryantii co-culture from UC Santa Barbara, California, United States - C9D4
NCBI BioProject Accession PRJNA653397
NCBI Locus Tag
H4Y91  
NCBI BioSample Accession SAMN15739888
PI Michelle O'Malley
Added By JGI automated process on 2019-09-19
Last Modified By JGI automated process on 2021-11-06
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Metatranscriptome of Anaeromyces robustus S4 x Methanobacterium bryantii co-culture on reed canary grass substrate  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid RNA
Sequencing Strategy
Metatranscriptome  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
Unrestricted  
JGI Portal Download Raw Sequence Data
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX9381734  (Link to NCBI )
Experiment Title Anaeromyces robustus S4 - Methanobacterium bryantii Isolate Metatranscriptome
Exp Library Strategy OTHER
Library Source METATRANSCRIPTOMIC
Library Selection other
Library Name GTZWW
Library Layout PAIRED
PROJECT COMPOSITION
Study Determining the genomic basis for interactions between gut fungi and methanogenic archaea
Biosample Anaeromyces robustus S4 x Methanobacterium bryantii co-culture from UC Santa Barbara, California, United States - C9D4
Analysis Projects
  
Number of Analysis Projects (AP) 0
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina NovaSeq
Illumina NovaSeq S4
Library Method (MIGS-28)
Illumina Low Input RNASeq w/PolyA Selection, Tubes; Illumina RNASeq w/PolyA Selection, Tubes  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Anaeromyces robustus S4 x Methanobacterium bryantii co-culture from UC Santa Barbara, California, United States - C9D4
Other Names (alias, synonyms, short names)
  
Sample Description
Anaeromyces robustus S4 x Methanobacterium bryantii co-culture on reed canary grass substrate  
SAMPLE TAXONOMY
NCBI Taxonomy ID 1670606
GOLD CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Lab enrichment  
Ecosystem Type
Defined media  
Ecosystem Subtype
  
Specific Ecosystem
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the SP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?

 

 

 

 

 

  Changing the SP Sequencing Strategy will also effect these items:

 

Do you want to continue with this Sequencing Strategy change?