PROJECT INFORMATION
GOLD Project ID
Gp0453477  
Project Name
Metatranscriptome of marine sediment microbial communities from Baltic Sea, Sweden - F19MarL  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Metatranscriptome of marine sediment microbial communities from Baltic Sea, Sweden - F19MarL
NCBI BioProject Accession PRJNA653487
NCBI Locus Tag
H4Z34  
NCBI BioSample Accession SAMN15741239
PI Samuel Hylander
Added By JGI automated process on 2019-09-19
Last Modified By JGI automated process on 2021-11-07
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Metatranscriptome of marine sediment microbial communities from Baltic Sea, Sweden  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid RNA
Sequencing Strategy
Metatranscriptome  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
Unrestricted  
JGI Award DOI 10.46936/10.25585/60001175
JGI Portal Download Raw Sequence Data
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX9165750  (Link to NCBI )
Experiment Title F19MarL metaT
Exp Library Strategy RNA_SEQ
Library Source METATRANSCRIPTOMIC
Library Selection RT-PCR
Library Name GUGSB
Library Layout PAIRED
PROJECT COMPOSITION
Study Marin sediment microbial communities from Baltic Sea, Sweden
Biosample Marine sediment microbial communities from Baltic Sea, Sweden - F19MarL
Analysis Projects Metatranscriptome of marine sediment microbial communities from Baltic Sea, Sweden - F19MarL (Metagenome Metatranscriptome)
Metatranscriptome of marine sediment microbial communities from Baltic Sea, Sweden - F19MarL (Metagenome Metatranscriptome Expression - Self)
Number of Analysis Projects (AP) 2
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina NovaSeq
Illumina NovaSeq S4
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Marine sediment microbial communities from Baltic Sea, Sweden - F19MarL
Other Names (alias, synonyms, short names)
  
Sample Description
Marine sediment microbial communities from Baltic Sea, Sweden  
SAMPLE TAXONOMY
NCBI Taxonomy ID 749907
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Coastal  
Specific Ecosystem
Sediment  

 

 

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