PROJECT INFORMATION
GOLD Project ID
Gp0450898  
Project Name
Metatranscriptome of Nanoflagellate Cafeteria roenbergensis infected with giant virus CroV and virophage mavirus, Gulf of Mexico, United States - CroV_maV_12_R2  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name
  
NCBI BioProject ID
NCBI BioProject Accession
NCBI Locus Tag
  
NCBI BioSample Accession
PI Matthias Fischer
Added By JGI automated process on 2019-08-19
Last Modified By JGI automated process on 2019-10-05
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Metatranscriptome of Nanoflagellate Cafeteria roenbergensis infected with giant virus CroV and virophage mavirus, Gulf of Mexico, United States; 12 hours timepoint  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid RNA
Sequencing Strategy
Metatranscriptome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Metatranscriptomes of protists Acanthamoeba and Cafeteria infected with their virophages from various locations
Biosample Nanoflagellate Cafeteria roenbergensis infected with giant virus CroV and virophage mavirus, Gulf of Mexico, United States - CroV_maV_12_R2
Analysis Projects
  
Number of Analysis Projects 0
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina NovaSeq
Library Method (MIGS-28)
Illumina RNASeq w/PolyA Selection, Tubes  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Nanoflagellate Cafeteria roenbergensis infected with giant virus CroV and virophage mavirus, Gulf of Mexico, United States - CroV_maV_12_R2
Other Names (alias, synonyms, short names)
  
Sample Description
Nanoflagellate Cafeteria roenbergensis infected with giant virus CroV and virophage mavirus, Gulf of Mexico, United States; 12 hours timepoint  
SAMPLE TAXONOMY
NCBI Taxonomy ID 2315767
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Coastal  
Specific Ecosystem
  

 

 

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