PROJECT INFORMATION
GOLD Project ID
Gp0443966  
Project Name
Vitis riparia sv. Riparia Gloire de Montpellier 1030  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Vitis riparia sv. Riparia Gloire de Montpellier 1030 genome sequencing
NCBI BioProject ID 512170
NCBI BioProject Accession PRJNA512170
NCBI Locus Tag
  
NCBI BioSample Accession SAMN10662253
PI
Added By JGI automated process on 2019-08-14
Last Modified By JGI automated process on 2020-06-08
Project Comments
  
Project Status
Complete and Published  
Project Relevance Agricultural
Sequencing Center Univ of Bordeaux
Collaborating Institute
  
Funding Agency
  
Project Description
Vitis riparia sv. Riparia Gloire de Montpellier 1030 genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX5189650  (Link to NCBI )
Experiment Title Vitis Riparia Gloire de Montpellier Genome sequencing and assembly
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160319_001411_42263_c100986302550000001823225107191611_s1_X0
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5189653  (Link to NCBI )
Experiment Title Vitis Riparia Gloire de Montpellier Genome sequencing and assembly
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160405_040147_42263_c100983512550000001823225207191642_s1_X0
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5189654  (Link to NCBI )
Experiment Title Vitis Riparia Gloire de Montpellier Genome sequencing and assembly
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160405_102352_42263_c100983512550000001823225207191643_s1_X0
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5189651  (Link to NCBI )
Experiment Title Vitis Riparia Gloire de Montpellier Genome sequencing and assembly
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160404_172318_42263_c100983512550000001823225207191640_s1_X0
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5189652  (Link to NCBI )
Experiment Title Vitis Riparia Gloire de Montpellier Genome sequencing and assembly
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160404_214229_42263_c100983512550000001823225207191641_s1_X0
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5189646  (Link to NCBI )
Experiment Title Vitis Riparia Gloire de Montpellier Genome sequencing and assembly
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160517_172710_42263_c100923122550000001823209605121600_s1_X0
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5189647  (Link to NCBI )
Experiment Title Vitis Riparia Gloire de Montpellier Genome sequencing and assembly
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160517_234623_42263_c100923122550000001823209605121601_s1_X0
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5189644  (Link to NCBI )
Experiment Title Vitis Riparia Gloire de Montpellier Genome sequencing and assembly
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160423_083435_42263_c100923272550000001823209605121623_s1_X0
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5189645  (Link to NCBI )
Experiment Title Vitis Riparia Gloire de Montpellier Genome sequencing and assembly
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160423_145248_42263_c100923272550000001823209605121624_s1_X0
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5189648  (Link to NCBI )
Experiment Title Vitis Riparia Gloire de Montpellier Genome sequencing and assembly
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160424_095209_42263_c100923272550000001823209605121627_s1_X0
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5189649  (Link to NCBI )
Experiment Title Vitis Riparia Gloire de Montpellier Genome sequencing and assembly
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160514_180655_42263_c100983382550000001823225207191634_s1_X0
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5189660  (Link to NCBI )
Experiment Title Vitis Riparia Gloire de Montpellier Genome sequencing and assembly
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160526_165858_42263_c100923242550000001823209605121650_s1_X0
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5189661  (Link to NCBI )
Experiment Title Vitis Riparia Gloire de Montpellier Genome sequencing and assembly
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160524_061851_42263_c100983962550000001823225207191672_s1_p0
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5189664  (Link to NCBI )
Experiment Title Vitis Riparia Gloire de Montpellier Genome sequencing and assembly
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160522_120832_42263_c100923342550000001823209605121627_s1_X0
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5189665  (Link to NCBI )
Experiment Title Vitis Riparia Gloire de Montpellier Genome sequencing and assembly
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160521_233024_42263_c100923342550000001823209605121625_s1_X0
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5189662  (Link to NCBI )
Experiment Title Vitis Riparia Gloire de Montpellier Genome sequencing and assembly
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160523_235938_42263_c100983962550000001823225207191671_s1_p0
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5189663  (Link to NCBI )
Experiment Title Vitis Riparia Gloire de Montpellier Genome sequencing and assembly
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160523_174025_42263_c100983962550000001823225207191670_s1_p0
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5189657  (Link to NCBI )
Experiment Title Vitis Riparia Gloire de Montpellier Genome sequencing and assembly
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160406_053104_42263_c100983512550000001823225207191646_s1_X0
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5189658  (Link to NCBI )
Experiment Title Vitis Riparia Gloire de Montpellier Genome sequencing and assembly
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160406_115213_42263_c100983512550000001823225207191647_s1_X0
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5189655  (Link to NCBI )
Experiment Title Vitis Riparia Gloire de Montpellier Genome sequencing and assembly
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160405_164631_42263_c100983512550000001823225207191644_s1_X0
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5189656  (Link to NCBI )
Experiment Title Vitis Riparia Gloire de Montpellier Genome sequencing and assembly
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160405_230701_42263_c100983512550000001823225207191645_s1_X0
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5189659  (Link to NCBI )
Experiment Title Vitis Riparia Gloire de Montpellier Genome sequencing and assembly
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160423_041035_42263_c100923272550000001823209605121622_s1_X0
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5189671  (Link to NCBI )
Experiment Title Vitis Riparia Gloire de Montpellier Genome sequencing and assembly
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name L341_HS076
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
 
SRA Experiment Id SRX5189672  (Link to NCBI )
Experiment Title Vitis Riparia Gloire de Montpellier Genome sequencing and assembly
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name rgm-3_TGCCTCAT-AHNCFCBBXX_L002
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_3000
 
SRA Experiment Id SRX5189670  (Link to NCBI )
Experiment Title Vitis Riparia Gloire de Montpellier Genome sequencing and assembly
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name rgm-1_AATAATGG-AHNCFCBBXX_L002
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_3000
 
SRA Experiment Id SRX5189675  (Link to NCBI )
Experiment Title Vitis Riparia Gloire de Montpellier Genome sequencing and assembly
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160614_173750_42263_c101005992550000001823231109161694_s1_p0
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5189632  (Link to NCBI )
Experiment Title Vitis Riparia Gloire de Montpellier Genome sequencing and assembly
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160609_043306_42263_c100983852550000001823225207191616_s1_p0
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5189676  (Link to NCBI )
Experiment Title Vitis Riparia Gloire de Montpellier Genome sequencing and assembly
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name L343_HS076
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
 
SRA Experiment Id SRX5189673  (Link to NCBI )
Experiment Title Vitis Riparia Gloire de Montpellier Genome sequencing and assembly
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name rgm-2_CCAGGGCA-AHNCFCBBXX_L002
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_3000
 
SRA Experiment Id SRX5189674  (Link to NCBI )
Experiment Title Vitis Riparia Gloire de Montpellier Genome sequencing and assembly
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160614_235703_42263_c101005992550000001823231109161695_s1_p0
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5189668  (Link to NCBI )
Experiment Title Vitis Riparia Gloire de Montpellier Genome sequencing and assembly
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160528_003503_42263_c100923242550000001823209605121655_s1_X0
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5189669  (Link to NCBI )
Experiment Title Vitis Riparia Gloire de Montpellier Genome sequencing and assembly
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160527_115637_42263_c100923242550000001823209605121653_s1_X0
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5189666  (Link to NCBI )
Experiment Title Vitis Riparia Gloire de Montpellier Genome sequencing and assembly
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160521_043220_42263_c100923342550000001823209605121622_s1_X0
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5189667  (Link to NCBI )
Experiment Title Vitis Riparia Gloire de Montpellier Genome sequencing and assembly
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160520_155402_42263_c100923342550000001823209605121620_s1_X0
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5189680  (Link to NCBI )
Experiment Title Vitis Riparia Gloire de Montpellier Genome sequencing and assembly
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160609_104942_42263_c100983852550000001823225207191617_s1_p0
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5189642  (Link to NCBI )
Experiment Title Vitis Riparia Gloire de Montpellier Genome sequencing and assembly
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160423_211133_42263_c100923272550000001823209605121625_s1_X0
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5189643  (Link to NCBI )
Experiment Title Vitis Riparia Gloire de Montpellier Genome sequencing and assembly
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160424_033316_42263_c100923272550000001823209605121626_s1_X0
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5189640  (Link to NCBI )
Experiment Title Vitis Riparia Gloire de Montpellier Genome sequencing and assembly
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160608_155203_42263_c100983852550000001823225207191614_s1_p0
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5189641  (Link to NCBI )
Experiment Title Vitis Riparia Gloire de Montpellier Genome sequencing and assembly
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160608_221116_42263_c100983852550000001823225207191615_s1_p0
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5189679  (Link to NCBI )
Experiment Title Vitis Riparia Gloire de Montpellier Genome sequencing and assembly
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160601_055449_42263_c100983612550000001823225207191616_s1_p0
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5189635  (Link to NCBI )
Experiment Title Vitis Riparia Gloire de Montpellier Genome sequencing and assembly
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160528_131549_42263_c100923242550000001823209605121657_s1_X0
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5189636  (Link to NCBI )
Experiment Title Vitis Riparia Gloire de Montpellier Genome sequencing and assembly
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160518_060536_42263_c100923122550000001823209605121602_s1_X0
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5189677  (Link to NCBI )
Experiment Title Vitis Riparia Gloire de Montpellier Genome sequencing and assembly
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160615_061851_42263_c101005992550000001823231109161696_s1_p0
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5189633  (Link to NCBI )
Experiment Title Vitis Riparia Gloire de Montpellier Genome sequencing and assembly
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name rgm-4_GTGTCATC-AHNCFCBBXX_L002
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_3000
 
SRA Experiment Id SRX5189678  (Link to NCBI )
Experiment Title Vitis Riparia Gloire de Montpellier Genome sequencing and assembly
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160531_233156_42263_c100983612550000001823225207191615_s1_p0
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5189634  (Link to NCBI )
Experiment Title Vitis Riparia Gloire de Montpellier Genome sequencing and assembly
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160528_065708_42263_c100923242550000001823209605121656_s1_X0
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5189639  (Link to NCBI )
Experiment Title Vitis Riparia Gloire de Montpellier Genome sequencing and assembly
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160608_093259_42263_c100983852550000001823225207191613_s1_p0
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5189637  (Link to NCBI )
Experiment Title Vitis Riparia Gloire de Montpellier Genome sequencing and assembly
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160518_122449_42263_c100923122550000001823209605121603_s1_X0
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5189638  (Link to NCBI )
Experiment Title Vitis Riparia Gloire de Montpellier Genome sequencing and assembly
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m160601_121022_42263_c100983612550000001823225207191617_s1_p0
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
PROJECT COMPOSITION
Study Vitis riparia sv. Riparia Gloire de Montpellier 1030 genome sequencing
Organism Vitis riparia sv. Riparia Gloire de Montpellier 1030
Analysis Projects Vitis riparia sv. Riparia Gloire de Montpellier 1030
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0519809
Organism Name
Vitis riparia sv. Riparia Gloire de Montpellier 1030  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
PLANTS-STREPTOPHYTA  
Genus
Vitis  
Genus Synonyms
  
Species
Vitis riparia  
Subspecies
  
Species Synonyms
  
Strain
  
Strain Synonyms
  
Serovar/Cultivar
Riparia Gloire de Montpellier 1030  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 96939
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
Viridiplantae  
NCBI Phylum
Streptophyta  
NCBI Class
Magnoliopsida  
NCBI Order
Vitales  
NCBI Family
Vitaceae  
NCBI Genus
Vitis  
NCBI Species
Vitis riparia  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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