PROJECT INFORMATION
GOLD Project ID
Gp0441319  
Project Name
Halapricum salinum CBA1105  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Halapricum salinum CBA1105 genome sequencing
NCBI BioProject ID 482735
NCBI BioProject Accession PRJNA482735
NCBI Locus Tag
  
NCBI BioSample Accession SAMN09711547
PI
Added By JGI automated process on 2019-08-14
Last Modified By JGI automated process on 2019-08-20
Project Comments
  
Project Status
Complete and Published  
Project Relevance
  
Sequencing Center Wuhan University (China)
Collaborating Institute
  
Funding Agency
  
Project Description
Halapricum salinum CBA1105 genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Nature communications 10(1):1688 A new type of DNA phosphorothioation-based antiviral system in archaea.

Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX4791022
Experiment Title SMRT-seq of 19729
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection size fractionation
Library Name H07_142
Library Layout PAIRED
Library Instrument PAC_BIO_RS
PROJECT COMPOSITION
Study Halapricum salinum CBA1105 genome sequencing
Organism Halapricum salinum CBA1105
Analysis Projects Halapricum salinum CBA1105
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) PacBio RS II
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0107359
Organism Name
Halapricum salinum CBA1105  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
ARCHAEAL  
Phylogeny
EURYARCHAEOTA-HALOBACTERIA  
Genus
Halapricum  
Genus Synonyms
  
Species
Halapricum salinum  
Subspecies
  
Species Synonyms
  
Strain
CBA1105  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.25355  
Exemplar Name
Halapricum salinum  
Taxon DOI
10.1601/tx.25355  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1457250
NCBI Superkingdom
Archaea  
NCBI Kingdom
  
NCBI Phylum
Euryarchaeota  
NCBI Class
Halobacteria  
NCBI Order
Halobacteriales  
NCBI Family
Haloarculaceae  
NCBI Genus
Halapricum  
NCBI Species
Halapricum salinum  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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