Studies
|
41,139 |
|
Biosamples
|
90,037 |
|
Sequencing Projects
|
326,762 |
|
Analysis Projects
|
269,306 |
| Organisms | 372,126 |
| PROJECT INFORMATION | |
|---|---|
|
GOLD Project ID
|
Gp0437683
|
|
Project Name
|
Rhodotorula toruloides IFO0880 4509 cas9 white b pPBO.014 resequencing
|
|
Other Names
|
|
|
Legacy GOLD ID
|
|
| NCBI BioProject Name | Rhodotorula toruloides IFO0880 4509 cas9 white b pPBO.014 resequencing |
|
NCBI BioProject ID
|
580730 |
|
NCBI BioProject Accession
|
PRJNA580730 |
|
NCBI Locus Tag
|
GGD27
|
|
NCBI BioSample Accession
|
SAMN13165144 |
| PI | John Gladden |
| Added By |
JGI automated process
on 2019-07-05 |
| Last Modified By |
JGI automated process
on 2019-10-31 |
| Project Comments |
|
|
Project Status
|
incomplete
|
|
Project Relevance
|
|
|
Sequencing Center
|
DOE Joint Genome Institute (JGI)
(USA)
|
|
Collaborating Institute
|
|
|
Funding Agency
|
U.S. Department of Energy (DOE)
(USA)
|
|
Project Description
|
Resequencing to map autonomous replicating sequences in Rhodotorula toruloides to develop plasmid systems
|
| Is JGI Project |
Yes
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Resequencing
|
| EXTERNAL PROJECT LINKS | |
| JGI Portal Download | Raw Sequence Data |
|
Project Information
|
|
|
Database
|
|
|
Genome Publications
|
|
|
Other Publications
|
|
| SRA Experiment |
|
| PROJECT COMPOSITION | |
| Study |
Developing plasmid systems for Rhodotorula toruloides |
| Organism |
Rhodotorula toruloides IFO0880 4509 cas9 white b pPBO.014 |
| Analysis Projects |
|
| Number of Analysis Projects |
0 |
| Number of DAPs |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
|
|
Finishing Goal
|
|
|
Sequencing Comments
|
|
|
Sequencing Technology
(MIGS-29)
|
Illumina NovaSeq |
|
Library Method
(MIGS-28)
|
Illumina Regular Fragment, 600bp, Plates
|
|
Number Of Reads
|
|
|
Read Size
|
|
|
Vector
|
|
| GC Percent |
62
|
| Chromosome Count |
|
| Plasmid Count |
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0516172 |
| Organism Name |
Rhodotorula toruloides IFO0880 4509 cas9 white b pPBO.014
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
EUKARYAL
|
| Phylogeny |
FUNGI-BASIDIOMYCOTA
|
| Genus |
Rhodotorula
|
| Genus Synonyms |
|
| Species |
Rhodotorula toruloides
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
IFO0880 4509 cas9 white b pPBO.014
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
|
| Type Strain |
|
| Exemplar DOI |
|
| Exemplar Name |
|
| Taxon DOI |
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Genetically modified
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
5286 |
| NCBI Superkingdom |
Eukaryota
|
| NCBI Kingdom |
Fungi
|
| NCBI Phylum |
Basidiomycota
|
| NCBI Class |
Microbotryomycetes
|
| NCBI Order |
Sporidiobolales
|
| NCBI Family |
Sporidiobolaceae
|
| NCBI Genus |
Rhodotorula
|
| NCBI Species |
Rhodotorula toruloides
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
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| Ecosystem Category |
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| Ecosystem Type |
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| Ecosystem Subtype |
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| Specific Ecosystem |
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
|
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
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| Cell Shape |
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| Motility |
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| Sporulation |
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| Temperature Range |
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| Salinity |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
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| Metabolisms |
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| Phenotypes |
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| Energy Sources |
|
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