PROJECT INFORMATION
GOLD Project ID
Gp0436096  
Project Name
Acidothermus cellulolyticus 11B transcriptome - 11B_T4a  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Acidothermus cellulolyticus 11B transcriptome - 11B_T4a
NCBI BioProject ID 581647
NCBI BioProject Accession PRJNA581647
NCBI Locus Tag
  
NCBI BioSample Accession SAMN13165504
PI Adam Guss
Added By JGI automated process on 2019-06-14
Last Modified By JGI automated process on 2019-10-31
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Acidothermus cellulolyticus 11B transcriptome  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid RNA
Sequencing Strategy
Transcriptome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Transcriptome sequencing of Micrococcus and Acidothermus strains for metabolic engineering applications
Organism Acidothermus cellulolyticus 11B
Analysis Projects
  
Number of Analysis Projects 0
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina NovaSeq
Library Method (MIGS-28)
Illumina Low Input RNASeq w/rRNA Depletion, Tubes  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
67  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0000258
Organism Name
Acidothermus cellulolyticus 11B  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Acidothermus  
Genus Synonyms
  
Species
Acidothermus cellulolyticus  
Subspecies
  
Species Synonyms
  
Strain
11B  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
ATCC 43068  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.7653  
Exemplar Name
Acidothermus cellulolyticus  
Taxon DOI
10.1601/tx.7653  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 28049
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Acidothermales  
NCBI Family
Acidothermaceae  
NCBI Genus
Acidothermus  
NCBI Species
Acidothermus cellulolyticus  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Thermal springs  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 301709
Genbank 16S ID AJ007290
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
  
Motility
  
Sporulation
Sporulating  
Temperature Range
Thermophile  
Salinity
  
pH
4-6  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Hot spring
Aquatic
Fresh water
Metabolisms Cellulose degrader
Biomass degrader
Phenotypes Non-Pathogen
Acidophile
Energy Sources
  

 

 

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