PROJECT INFORMATION
GOLD Project ID
Gp0434164  
Project Name
Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Alfalfa, Gen6, Rep 1  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name
  
NCBI BioProject ID
NCBI BioProject Accession
NCBI Locus Tag
  
NCBI BioSample Accession
PI Michelle O'Malley
Added By JGI automated process on 2019-06-08
Last Modified By JGI automated process on 2020-01-13
Project Comments
  
Project Status
targeted  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid RNA
Sequencing Strategy
Metatranscriptome  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Determining the genomic basis for interactions between gut fungi and methanogenic archaea
Biosample Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Alfalfa, Gen6, Rep 1
Analysis Projects Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Alfalfa, Gen6, Rep 1 (Eukaryote Community Metatranscriptome)
Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Alfalfa, Gen6, Rep 1 (Eukaryote Community Metatranscriptome Expression - Self)
Number of Analysis Projects 2
Number of DAPs
1  
SEQUENCING INFORMATION
Sequencing Status Awaiting Sample
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina NovaSeq
Illumina NovaSeq S4
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Alfalfa, Gen6, Rep 1
Other Names (alias, synonyms, short names)
  
Sample Description
Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States  
SAMPLE TAXONOMY
NCBI Taxonomy ID 1861841
GOLD CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Mammals  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Large intestine  
Specific Ecosystem
Fecal  

 

 

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