PROJECT INFORMATION
GOLD Project ID
Gp0403681  
Project Name
Metatranscriptome of Brachypodium distachyon Bd21roots from Texas, United States - 3dpi-Set-root-Mock_Aredo  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Metatranscriptome of Brachypodium distachyon Bd21roots from Texas, United States - 3dpi-Set-root-Mock_Aredo
NCBI BioProject Accession PRJNA620767
NCBI Locus Tag
HD143  
NCBI BioSample Accession SAMN14510987
PI Kranthi Mandadi
Added By JGI automated process on 2019-04-12
Last Modified By JGI automated process on 2020-04-04
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Metatranscriptome of Brachypodium distachyon Bd21roots from Texas, United States; seeds were grown in growth chambers with a 14/10 h light/dark cycle and temperature at 21/18C light/dark. Humidity was set at constant 50%.  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid RNA
Sequencing Strategy
Metatranscriptome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX8135444  (Link to NCBI )
Experiment Title Setaria viridis A10 roots infected with BSMV, MMMV, and WSMV Metatranscriptome
Exp Library Strategy OTHER
Library Source METATRANSCRIPTOMIC
Library Selection RT-PCR
Library Name GNXPG
Library Layout PAIRED
PROJECT COMPOSITION
Study Model grass eukaryotic communities after infection by different agents from various locations
Biosample Brachypodium distachyon Bd21roots from Texas, United States - 3dpi-Set-root-Mock_Aredo
Analysis Projects
  
Number of Analysis Projects (AP) 0
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina NovaSeq
Library Method (MIGS-28)
Illumina RNASeq w/PolyA Selection, Tubes  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Brachypodium distachyon Bd21roots from Texas, United States - 3dpi-Set-root-Mock_Aredo
Other Names (alias, synonyms, short names)
  
Sample Description
Brachypodium distachyon Bd21roots from Texas, United States; seeds were grown in growth chambers with a 14/10 h light/dark cycle and temperature at 21/18C light/dark. Humidity was set at constant 50%.  
SAMPLE TAXONOMY
NCBI Taxonomy ID 1118232
GOLD CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Roots  
Ecosystem Subtype
  
Specific Ecosystem
  

 

 

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