PROJECT INFORMATION
GOLD Project ID
Gp0401543  
Project Name
Metatranscriptome of sheep gut fungus Caecomyces churrovis and Methanobacterium bryantii co-culture from California, United States - CG2  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Metatranscriptome of sheep gut fungus Caecomyces churrovis and Methanobacterium bryantii co-culture from California, United States - CG2
NCBI BioProject Accession PRJNA621307
NCBI Locus Tag
HD538  
NCBI BioSample Accession SAMN14514821
PI Michelle O'Malley
Added By JGI automated process on 2019-03-08
Last Modified By JGI automated process on 2021-11-06
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Metatranscriptome of sheep gut fungus Caecomyces churrovis and Methanobacterium bryantii co-culture from California, United States; pure culture on reed canary grass substrate, amended with Glucose  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid RNA
Sequencing Strategy
Metatranscriptome  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
Unrestricted  
JGI Portal Download Raw Sequence Data
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX8290976  (Link to NCBI )
Experiment Title Caecomyces churrovis and Methanobacterium bryantii Metatranscriptome, Counting
Exp Library Strategy OTHER
Library Source METATRANSCRIPTOMIC
Library Selection other
Library Name GNCSG
Library Layout PAIRED
PROJECT COMPOSITION
Study Determining the genomic basis for interactions between gut fungi and methanogenic archaea
Biosample Sheep gut fungus Caecomyces churrovis and Methanobacterium bryantii co-culture from California, United States - CG2
Analysis Projects
  
Number of Analysis Projects (AP) 0
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina NovaSeq
Library Method (MIGS-28)
Illumina Low Input RNASeq w/PolyA Selection, Tubes  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Sheep gut fungus Caecomyces churrovis and Methanobacterium bryantii co-culture from California, United States - CG2
Other Names (alias, synonyms, short names)
  
Sample Description
Sheep gut fungus Caecomyces churrovis and Methanobacterium bryantii co-culture from California, United States; pure culture on reed canary grass substrate, amended with Glucose  
SAMPLE TAXONOMY
NCBI Taxonomy ID 1861841
GOLD CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Mammals  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Large intestine  
Specific Ecosystem
Fecal  

 

 

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