PROJECT INFORMATION | |||||||||||||||||
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GOLD Project ID
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Gp0401543
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Project Name
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Metatranscriptome of sheep gut fungus Caecomyces churrovis and Methanobacterium bryantii co-culture from California, United States - CG2
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Other Names
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Legacy GOLD ID
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NCBI BioProject Name | Metatranscriptome of sheep gut fungus Caecomyces churrovis and Methanobacterium bryantii co-culture from California, United States - CG2 | ||||||||||||||||
NCBI BioProject Accession
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PRJNA621307 |
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NCBI Locus Tag
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HD538
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NCBI BioSample Accession
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SAMN14514821 |
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PI | Michelle O'Malley | ||||||||||||||||
Added By |
JGI automated process
on 2019-03-08 |
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Last Modified By |
JGI automated process
on 2021-11-06 |
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Project Comments |
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Project Status
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incomplete
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Project Relevance
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Sequencing Center
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DOE Joint Genome Institute (JGI)
(USA)
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Collaborating Institute
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Funding Agency
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U.S. Department of Energy (DOE)
(USA)
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Project Description
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Metatranscriptome of sheep gut fungus Caecomyces churrovis and Methanobacterium bryantii co-culture from California, United States; pure culture on reed canary grass substrate, amended with Glucose
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Is JGI Project |
Yes
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Project Information Visibility
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Public | ||||||||||||||||
PROJECT TYPE | |||||||||||||||||
Specimen
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Biome |
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Nucleic Acid
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RNA |
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Sequencing Strategy
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Metatranscriptome
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EXTERNAL PROJECT LINKS | |||||||||||||||||
JGI Data Utilization Status
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Unrestricted
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JGI Award DOI
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10.46936/10.25585/60001061 |
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JGI Portal Download | Raw Sequence Data | ||||||||||||||||
Genome Publications
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Other Publications
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Ignored Publications
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Unassigned Publications
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SRA Experiment |
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PROJECT COMPOSITION | |||||||||||||||||
Study |
Determining the genomic basis for interactions between gut fungi and methanogenic archaea |
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Biosample |
Sheep gut fungus Caecomyces churrovis and Methanobacterium bryantii co-culture from California, United States - CG2 |
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Analysis Projects |
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Number of Analysis Projects (AP) |
0 |
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Number of Derived Analyis Projects (DAP) |
0
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SEQUENCING INFORMATION | |
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Sequencing Status
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Complete |
Sequencing Quality (MIGS-31) |
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Finishing Goal
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Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Illumina NovaSeq |
Library Method
(MIGS-28)
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Illumina Low Input RNASeq w/PolyA Selection, Tubes
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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GC Percent |
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Chromosome Count |
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Plasmid Count |
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SAMPLE NAME | |
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Sample Name |
Sheep gut fungus Caecomyces churrovis and Methanobacterium bryantii co-culture from California, United States - CG2 |
Other Names (alias, synonyms, short names) |
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Sample Description |
Sheep gut fungus Caecomyces churrovis and Methanobacterium bryantii co-culture from California, United States; pure culture on reed canary grass substrate, amended with Glucose
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SAMPLE TAXONOMY | |
NCBI Taxonomy ID |
1861841 |
GOLD CLASSIFICATION | |
Ecosystem |
Host-associated
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Ecosystem Category |
Mammals
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Ecosystem Type |
Digestive system
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Ecosystem Subtype |
Large intestine
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Specific Ecosystem |
Fecal
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