PROJECT INFORMATION
GOLD Project ID
Gp0399622  
Project Name
Pacific oyster guts microbial communities from the Wrigley Marine Sciences Center (WMSC), Catalina Island, CA, USA - GutExt11Week12  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name High turnover of gut microbiome from algal feedstock experimental manipulations in the Pacific oyster (Crassostrea gigas)
NCBI BioProject ID 416146
NCBI BioProject Accession PRJNA416146
NCBI Locus Tag
  
NCBI BioSample Accession SAMN07943311
PI
Added By JGI automated process on 2019-02-28
Last Modified By
Project Comments
  
Project Status
incomplete  
Project Relevance Evolution
Sequencing Center University of Southern California (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Pacific oyster guts microbial communities from the Wrigley Marine Sciences Center (WMSC), Catalina Island, CA, USA  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX3344722
Experiment Title GutExt11Week12
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection RANDOM
Library Name F2R2_L001
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
PROJECT COMPOSITION
Study Pacific oyster feces microbial communities from the Wrigley Marine Sciences Center (WMSC), Catalina Island, CA, USA
Biosample Pacific oyster guts microbial communities from the Wrigley Marine Sciences Center (WMSC), Catalina Island, CA, USA - GutExt11Week12
Analysis Projects
  
Number of Analysis Projects 0
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status In progress
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Pacific oyster guts microbial communities from the Wrigley Marine Sciences Center (WMSC), Catalina Island, CA, USA - GutExt11Week12
Other Names (alias, synonyms, short names)
  
Sample Description
Pacific oyster guts microbial communities from the Wrigley Marine Sciences Center (WMSC), Catalina Island, CA, USA  
SAMPLE TAXONOMY
NCBI Taxonomy ID 1417798
GOLD CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Mollusca  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  

 

 

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