PROJECT INFORMATION
GOLD Project ID
Gp0396405  
Project Name
Metatranscriptome of Brachypodium distachyon ABR4 spikelets infected with Ustilago bromivora from phytochamber in Vienna, Austria - A3-2I sp  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Metatranscriptome of Brachypodium distachyon ABR4 spikelets infected with Ustilago bromivora from phytochamber in Vienna, Austria - A3-2I sp
NCBI BioProject ID 566928
NCBI BioProject Accession PRJNA566928
NCBI Locus Tag
F4667  
NCBI BioSample Accession SAMN12794093
PI Kranthi Mandadi
Added By JGI automated process on 2019-02-07
Last Modified By JGI automated process on 2019-09-20
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Metatranscriptome of Brachypodium distachyon ABR4 spikelets infected with Ustilago bromivora from phytochamber in Vienna, Austria; 4 weeks after infection  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid RNA
Sequencing Strategy
Metatranscriptome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Model grass eukaryotic communities after infection by different agents from various locations
Biosample Brachypodium distachyon ABR4 spikelets infected with Ustilago bromivora from phytochamber in Vienna, Austria - A3-2I sp
Analysis Projects
  
Number of Analysis Projects 0
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status In progress
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina NovaSeq
Library Method (MIGS-28)
Illumina RNASeq w/PolyA Selection, Tubes  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Brachypodium distachyon ABR4 spikelets infected with Ustilago bromivora from phytochamber in Vienna, Austria - A3-2I sp
Other Names (alias, synonyms, short names)
  
Sample Description
Brachypodium distachyon ABR4 spikelets infected with Ustilago bromivora from phytochamber in Vienna, Austria; 4 weeks after infection  
SAMPLE TAXONOMY
NCBI Taxonomy ID 1297885
GOLD CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Phyllosphere  
Ecosystem Subtype
  
Specific Ecosystem
  

 

 

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