Studies
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43,778 |
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Biosamples
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100,585 |
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Sequencing Projects
|
345,927 |
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Analysis Projects
|
272,591 |
| Organisms | 378,866 |
| PROJECT INFORMATION | |||||||||||||||||||||||||||||||||
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GOLD Project ID
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Gp0393738
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Project Name
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Clostridium saccharobutylicum DSM 13864
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Other Names
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Legacy GOLD ID
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| NCBI BioProject Name |
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NCBI BioProject ID
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210726 |
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NCBI BioProject Accession
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PRJNA210726 |
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NCBI Locus Tag
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NCBI BioSample Accession
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SAMN02251455 |
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| PI | |||||||||||||||||||||||||||||||||
| Added By |
JGI automated process
on 2019-01-17 |
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| Last Modified By | |||||||||||||||||||||||||||||||||
| Project Comments |
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Project Status
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Permanent Draft
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Project Relevance
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Industrial |
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Sequencing Center
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Jiangnan University
(China)
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Collaborating Institute
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Funding Agency
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Project Description
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Clostridium saccharobutylicum DSM 13864 genome sequencing
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| Is JGI Project |
No
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Project Information Visibility
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Public | ||||||||||||||||||||||||||||||||
| PROJECT TYPE | |||||||||||||||||||||||||||||||||
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Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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| EXTERNAL PROJECT LINKS | |||||||||||||||||||||||||||||||||
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Project Information
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Database
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Genome Publications
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Wei Sheng Wu Xue Bao
55(11):1427-36
[Construction of butanol-producing pathway from Clostridium saccharobutylicum in Escherichia coli JM109 (DE3) and its fermentation].
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Other Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |||||||||||||||||||||||||||||||||
| Study |
Clostridium saccharobutylicum DSM 13864 genome sequencing |
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| Organism |
Clostridium saccharobutylicum DSM 13864 |
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| Analysis Projects |
Clostridium saccharobutylicum DSM 13864 |
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| Number of Analysis Projects (AP) |
1
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| Number of Derived Analyis Projects (DAP) |
0
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| SEQUENCING INFORMATION | |
|---|---|
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Sequencing Status
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Complete |
| Sequencing Quality (MIGS-31) |
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Finishing Goal
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Sequencing Comments
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Sequencing Technology
(MIGS-29)
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Illumina HiSeq |
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Library Method
(MIGS-28)
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0013384 |
| Organism Name |
Clostridium saccharobutylicum DSM 13864
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| Other names (alias, synonyms, short names, common names) |
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| Organism Domain |
BACTERIAL
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| Phylogeny |
FIRMICUTES
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| Genus |
Clostridium
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| Genus Synonyms |
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| Species |
Clostridium saccharobutylicum
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| Subspecies |
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| Species Synonyms |
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| Strain |
DSM 13864
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| Strain Synonyms |
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| Serovar/Cultivar |
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| Culture Collection ID |
DSM 13864
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| Type Strain |
Yes
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| Exemplar DOI |
10.1601/ex.4010
|
| Exemplar Name |
Clostridium saccharobutylicum
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| Taxon DOI |
10.1601/tx.4010
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| Biosafety Level |
1
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| Organism Comments |
|
| Cultured |
Yes
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| Culture Type |
Isolate
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| Organism Type |
Natural
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| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
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ORGANISM TAXONOMY
|
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| NCBI Taxonomy ID |
1345695 |
| NCBI Superkingdom |
Bacteria
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| NCBI Kingdom |
|
| NCBI Phylum |
Firmicutes
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| NCBI Class |
Clostridia
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| NCBI Order |
Clostridiales
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| NCBI Family |
Clostridiaceae
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| NCBI Genus |
Clostridium
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| NCBI Species |
Clostridium saccharobutylicum
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| ISOLATION CLASSIFICATION | |
| Ecosystem |
Host-associated
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| Ecosystem Category |
Plants
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| Ecosystem Type |
Unclassified
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| Ecosystem Subtype |
Unclassified
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| Specific Ecosystem |
Unclassified
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
U16147 |
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
Anaerobe
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| Cell Shape |
Rod-shaped
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| Motility |
Motile
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| Sporulation |
Sporulating
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| Temperature Range |
Mesophile
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| Salinity |
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| pH |
6.2
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| Cell Diameter |
1.4-6.3
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| Cell Length |
3.8-10
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| Color |
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| Gram Staining |
Gram+
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| Biotic Relationships | Free living |
| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
|
| Cell Arrangements |
Singles Pairs |
| Diseases |
|
| Known Habitats |
Soil |
| Metabolisms |
Solvent producer |
| Phenotypes |
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| Energy Sources |
|
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