PROJECT INFORMATION | |||||||||||||||||||||||||||||||||
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GOLD Project ID
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Gp0393738
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Project Name
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Clostridium saccharobutylicum DSM 13864
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Other Names
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Legacy GOLD ID
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NCBI BioProject Name |
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NCBI BioProject ID
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210726 |
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NCBI BioProject Accession
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PRJNA210726 |
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NCBI Locus Tag
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NCBI BioSample Accession
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SAMN02251455 |
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Added By |
JGI automated process
on 2019-01-17 |
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Project Comments |
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Project Status
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Permanent Draft
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Project Relevance
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Industrial |
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Sequencing Center
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Jiangnan University
(China)
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Collaborating Institute
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Funding Agency
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Project Description
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Clostridium saccharobutylicum DSM 13864 genome sequencing
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Is JGI Project |
No
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Project Information Visibility
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Public | ||||||||||||||||||||||||||||||||
PROJECT TYPE | |||||||||||||||||||||||||||||||||
Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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EXTERNAL PROJECT LINKS | |||||||||||||||||||||||||||||||||
Project Information
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Database
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Genome Publications
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Wei Sheng Wu Xue Bao
55(11):1427-36
[Construction of butanol-producing pathway from Clostridium saccharobutylicum in Escherichia coli JM109 (DE3) and its fermentation].
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Other Publications
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SRA Experiment |
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PROJECT COMPOSITION | |||||||||||||||||||||||||||||||||
Study |
Clostridium saccharobutylicum DSM 13864 genome sequencing |
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Organism |
Clostridium saccharobutylicum DSM 13864 |
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Analysis Projects |
Clostridium saccharobutylicum DSM 13864 |
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Number of Analysis Projects (AP) |
1 |
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Number of Derived Analyis Projects (DAP) |
0
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SEQUENCING INFORMATION | |
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Sequencing Status
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Complete |
Sequencing Quality (MIGS-31) |
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Finishing Goal
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Contamination Screening Input
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DNA Amplification Method
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Illumina HiSeq |
Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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GC Percent |
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Chromosome Count |
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Plasmid Count |
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ORGANISM NAME | |
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GOLD Organism ID |
Go0013384 |
Organism Name |
Clostridium saccharobutylicum DSM 13864
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Other names (alias, synonyms, short names, common names) |
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Organism Domain |
BACTERIAL
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Phylogeny |
FIRMICUTES
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Genus |
Clostridium
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Genus Synonyms |
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Species |
Clostridium saccharobutylicum
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Subspecies |
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Species Synonyms |
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Strain |
DSM 13864
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Strain Synonyms |
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Serovar/Cultivar |
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Culture Collection ID |
DSM 13864
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Type Strain |
Yes
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Exemplar DOI |
10.1601/ex.4010
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Exemplar Name |
Clostridium saccharobutylicum
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Taxon DOI |
10.1601/tx.4010
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Biosafety Level |
1
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Organism Comments |
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Cultured |
Yes
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Culture Type |
Isolate
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Organism Type |
Natural
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Uncultured Type |
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Commercial Strain |
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Commercial Strain Comments |
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ORGANISM TAXONOMY
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NCBI Taxonomy ID |
1345695 |
NCBI Superkingdom |
Bacteria
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NCBI Kingdom |
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NCBI Phylum |
Firmicutes
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NCBI Class |
Clostridia
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NCBI Order |
Clostridiales
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NCBI Family |
Clostridiaceae
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NCBI Genus |
Clostridium
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NCBI Species |
Clostridium saccharobutylicum
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ISOLATION CLASSIFICATION | |
Ecosystem |
Host-associated
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Ecosystem Category |
Plants
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Ecosystem Type |
Unclassified
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Ecosystem Subtype |
Unclassified
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Specific Ecosystem |
Unclassified
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ORGANISM EXTERNAL REFERENCES | |
Strain Info ID |
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Genbank 16S ID |
U16147 |
GENERAL PROPERTIES | |
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Oxygen Requirement |
Anaerobe
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Cell Shape |
Rod-shaped
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Motility |
Motile
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Sporulation |
Sporulating
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Temperature Range |
Mesophile
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Salinity |
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pH |
6.2
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Cell Diameter |
1.4-6.3
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Cell Length |
3.8-10
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Color |
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Gram Staining |
Gram+
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Biotic Relationships | Free living |
Symbiotic Physical Interaction |
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Symbiotic Relationship |
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Symbiont Name |
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Symbiont Taxon ID |
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Cell Arrangements |
Singles Pairs |
Diseases |
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Known Habitats |
Soil |
Metabolisms |
Solvent producer |
Phenotypes |
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Energy Sources |
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