PROJECT INFORMATION
GOLD Project ID
Gp0393738  
Project Name
Clostridium saccharobutylicum DSM 13864  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name
  
NCBI BioProject ID 210726
NCBI BioProject Accession PRJNA210726
NCBI Locus Tag
  
NCBI BioSample Accession SAMN02251455
PI
Added By JGI automated process on 2019-01-17
Last Modified By
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Industrial
Sequencing Center Jiangnan University (China)
Collaborating Institute
  
Funding Agency
  
Project Description
Clostridium saccharobutylicum DSM 13864 genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Wei Sheng Wu Xue Bao 55(11):1427-36 [Construction of butanol-producing pathway from Clostridium saccharobutylicum in Escherichia coli JM109 (DE3) and its fermentation].

Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX318441
Experiment Title Clostridium saccharobutylicum DSM 13864 - 300 bp insert library
Exp Library Strategy WGA
Library Source GENOMIC
Library Selection RANDOM
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_1000
 
SRA Experiment Id SRX333610
Experiment Title Clostridium saccharobutylicum DSM 13864 - 3000 bp insert library
Exp Library Strategy WGA
Library Source GENOMIC
Library Selection RANDOM
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_1000
PROJECT COMPOSITION
Study Clostridium saccharobutylicum DSM 13864 genome sequencing
Organism Clostridium saccharobutylicum DSM 13864
Analysis Projects Clostridium saccharobutylicum DSM 13864
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0013384
Organism Name
Clostridium saccharobutylicum DSM 13864  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Clostridium  
Genus Synonyms
  
Species
Clostridium saccharobutylicum  
Subspecies
  
Species Synonyms
  
Strain
DSM 13864  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 13864  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.4010  
Exemplar Name
Clostridium saccharobutylicum  
Taxon DOI
10.1601/tx.4010  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1345695
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Clostridia  
NCBI Order
Clostridiales  
NCBI Family
Clostridiaceae  
NCBI Genus
Clostridium  
NCBI Species
Clostridium saccharobutylicum  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID U16147
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Sporulating  
Temperature Range
Mesophile  
Salinity
  
pH
6.2-7  
Cell Diameter
1.4-6.3  
Cell Length
3.8-10  
Color
  
Gram Staining
Gram+  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Pairs
Diseases
  
Known Habitats Soil
Metabolisms Solvent producer
Phenotypes
  
Energy Sources
  

 

 

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