PROJECT INFORMATION
GOLD Project ID
Gp0393407  
Project Name
Pantoea agglomerans TH81  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Pantoea agglomerans TH81
NCBI BioProject ID 486198
NCBI BioProject Accession PRJNA486198
NCBI Locus Tag
D0A61  
NCBI BioSample Accession SAMN09840060
PI
Added By JGI automated process on 2019-01-17
Last Modified By Hema Katta on 2019-07-30
Project Comments
  
Project Status
Complete and Published  
Project Relevance Environmental
Sequencing Center University of Alaska Fairbanks
Collaborating Institute
  
Funding Agency
  
Project Description
Pantoea agglomerans TH81 genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Microbiol Resour Announc Complete Genome Sequence of Pantoea agglomerans TH81, Isolated from a Permafrost Thaw Gradient.

Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX4941544  (Link to NCBI )
Experiment Title WGS of Pantoea agglomerans: bacterial isolate
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name metal_20180505
Library Layout SINGLE
Library Instrument MIN_ION
 
SRA Experiment Id SRX4941543  (Link to NCBI )
Experiment Title WGS of Pantoea agglomerans: bacterial isolate
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name TH81
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
PROJECT COMPOSITION
Study Pantoea agglomerans TH81 genome sequencing
Organism Pantoea agglomerans TH81
Analysis Projects Pantoea agglomerans TH81
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina MiSeq
Oxford Nanopore MinION
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0508695
Organism Name
Pantoea agglomerans TH81  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Pantoea  
Genus Synonyms
  
Species
Pantoea agglomerans  
Subspecies
  
Species Synonyms
  
Strain
TH81  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 549
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Enterobacterales  
NCBI Family
Erwiniaceae  
NCBI Genus
Pantoea  
NCBI Species
Pantoea agglomerans  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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