PROJECT INFORMATION
GOLD Project ID
Gp0387159  
Project Name
Altererythrobacter sp. Ery12  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Altererythrobacter
NCBI BioProject Accession PRJNA319016
NCBI Locus Tag
D6858  
NCBI BioSample Accession SAMN09939629
PI
Added By JGI automated process on 2019-01-07
Last Modified By
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Environmental
Sequencing Center Second Institute of Oceanography, State Oceanic Administration
Collaborating Institute
  
Funding Agency
  
Project Description
Altererythrobacter sp. Ery12 genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications Mar Genomics Complete genome sequence of the heavy metal resistant bacterium Altererythrobacter atlanticus 26DY36(T), isolated from deep-sea sediment of the North Atlantic Mid-ocean ridge.

Mar Genomics Complete genome sequence of a benzo[a]pyrene-degrading bacterium Altererythrobacter epoxidivorans CGMCC 1.7731(T).

Show more publications...

Ignored Publications
  
Unassigned Publications International Journal of Systematic and Evolutionary Microbiology 62(Pt 1):28-32 Altererythrobacter xinjiangensis sp. nov., isolated from desert sand, and emended description of the genus Altererythrobacter.

International Journal of Systematic and Evolutionary Microbiology 60(Pt 2):307-11 Altererythrobacter marensis sp. nov., isolated from seawater.

Show more publications...

International Journal of Systematic and Evolutionary Microbiology 63(Pt 3):971-6 Altererythrobacter gangjinensis sp. nov., a marine bacterium isolated from a tidal flat.

International Journal of Systematic and Evolutionary Microbiology 64(Pt 1):116-21 Altererythrobacter atlanticus sp. nov., isolated from deep-sea sediment.

International Journal of Systematic and Evolutionary Microbiology 59(Pt 12):2973-6 Altererythrobacter marinus sp. nov., isolated from deep seawater.

International Journal of Systematic and Evolutionary Microbiology 64(Pt 2):631-7 Altererythrobacter xiamenensis sp. nov., an algicidal bacterium isolated from red tide seawater.

International Journal of Systematic and Evolutionary Microbiology 57(Pt 10):2207-11 Altererythrobacter epoxidivorans gen. nov., sp. nov., an epoxide hydrolase-active, mesophilic marine bacterium isolated from cold-seep sediment, and reclassification of Erythrobacter luteolus Yoon et al. 2005 as Altererythrobacter luteolus comb. nov.

International Journal of Systematic and Evolutionary Microbiology 61(Pt 9):2035-9 Altererythrobacter dongtanensis sp. nov., isolated from a tidal flat.

International Journal of Systematic and Evolutionary Microbiology 63(Pt 1):93-7 Altererythrobacter troitsensis sp. nov., isolated from the sea urchin Strongylocentrotus intermedius.

International Journal of Systematic and Evolutionary Microbiology 61(Pt 4):709-15 Altererythrobacter namhicola sp. nov. and Altererythrobacter aestuarii sp. nov., isolated from seawater.

International Journal of Systematic and Evolutionary Microbiology 61(Pt 12):2956-61 Altererythrobacter ishigakiensis sp. nov., an astaxanthin-producing bacterium isolated from a marine sediment.

SRA Experiment
  
PROJECT COMPOSITION
Study Altererythrobacter genome sequencing - Second Institute of Oceanography
Organism Altererythrobacter sp. Ery12
Analysis Projects Altererythrobacter sp. Ery12
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0502876
Organism Name
Altererythrobacter sp. Ery12  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Altererythrobacter  
Genus Synonyms
  
Species
Altererythrobacter sp. Ery12  
Subspecies
  
Species Synonyms
  
Strain
Ery12  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 2306996
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Sphingomonadales  
NCBI Family
Erythrobacteraceae  
NCBI Genus
Tsuneonella  
NCBI Species
Tsuneonella suprasediminis  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the SP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?

 

 

 

 

 

  Changing the SP Sequencing Strategy will also effect these items:

 

Do you want to continue with this Sequencing Strategy change?