PROJECT INFORMATION
GOLD Project ID
Gp0348926  
Project Name
Peat soil microbial communities from McLean, Ithaca, NY, United States - MB00N  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Peat soil microbial communities from McLean, Ithaca, NY, United States - MB00N
NCBI BioProject ID 568277
NCBI BioProject Accession PRJNA568277
NCBI Locus Tag
F5H04  
NCBI BioSample Accession SAMN12794949
PI Ruth Richardson
Added By JGI automated process on 2018-11-30
Last Modified By JGI automated process on 2020-04-04
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Peat soil microbial communities from McLean, Ithaca, NY, United States; untreated peat soil  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX7543022  (Link to NCBI )
Experiment Title MB00N metagenome
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection RANDOM
Library Name GBXHO
Library Layout PAIRED
PROJECT COMPOSITION
Study Lab enriched peat soil microbial communities from two peatlands near Ithaca, NY, United States
Biosample Peat soil microbial communities from McLean, Ithaca, NY, United States - MB00N
Analysis Projects Peat soil microbial communities from McLean, Ithaca, NY, United States - MB00N
MB metagenomes combined assembly
Number of Analysis Projects (AP)
2  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina NovaSeq
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Tubes  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Peat soil microbial communities from McLean, Ithaca, NY, United States - MB00N
Other Names (alias, synonyms, short names)
  
Sample Description
Peat soil microbial communities from McLean, Ithaca, NY, United States; untreated peat soil  
SAMPLE TAXONOMY
NCBI Taxonomy ID 1799672
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Peat  
Ecosystem Subtype
  
Specific Ecosystem
  

 

 

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