PROJECT INFORMATION
GOLD Project ID
Gp0346129  
Project Name
Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day14_3  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day14_3
NCBI BioProject Accession PRJNA570093
NCBI Locus Tag
F5S33  
NCBI BioSample Accession SAMN12813820
PI Steven W. Singer
Added By JGI automated process on 2018-11-08
Last Modified By JGI automated process on 2022-09-04
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Metatranscriptome of sorghum-adapted microbial communities enriched on stacked mutant (SM) sorghum from Joint BioEnergy Institute, Emeryville, California, United States  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid RNA
Sequencing Strategy
Metatranscriptome  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
Unrestricted  
JGI Award DOI 10.46936/10.25585/60000909
JGI Portal Download Raw Sequence Data
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX7582882  (Link to NCBI )
Experiment Title SM_Day14_3 metatranscriptome
Exp Library Strategy RNA_SEQ
Library Source METATRANSCRIPTOMIC
Library Selection other
Library Name GBUZP
Library Layout PAIRED
PROJECT COMPOSITION
Study Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States
Biosample Lab enriched sorghum-adapted microbial communities from California, United States - SM_Day14_3
Analysis Projects Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day14_3 (Metagenome Metatranscriptome Expression - Other)
Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day14_3 (Metagenome Metatranscriptome Expression - Other)
Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day14_3 (Metagenome Metatranscriptome)
Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day14_3 (Metagenome Metatranscriptome Expression - Other)
Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day14_3 (Metagenome Metatranscriptome Expression - Other)
Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day14_3 (Metagenome Metatranscriptome Expression - Self)
Number of Analysis Projects (AP) 6
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina NovaSeq
Library Method (MIGS-28)
Illumina Low Input RNASeq w/rRNA Depletion, Plates  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Lab enriched sorghum-adapted microbial communities from California, United States - SM_Day14_3
Other Names (alias, synonyms, short names)
  
Sample Description
Sorghum-adapted microbial communities enriched on stacked mutant (SM) sorghum from Joint BioEnergy Institute, Emeryville, California, United States  
SAMPLE TAXONOMY
NCBI Taxonomy ID 662107
GOLD CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Bioreactor  
Ecosystem Type
SSF (Solid state fermentation)  
Ecosystem Subtype
Aerobic  
Specific Ecosystem
Biomass  

 

 

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