PROJECT INFORMATION
GOLD Project ID
Gp0344927  
Project Name
Metatranscriptome of Pinus sylvestris lateral roots inoculated with Glonium stellatum from greenhouse in Uitikon, Zurich, Switzerland - Myc_Glost_Pine_R2  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Metatranscriptome of Pinus sylvestris lateral roots inoculated with Glonium stellatum from greenhouse in Uitikon, Zurich, Switzerland - Myc_Glost_Pine_R2
NCBI BioProject ID 535891
NCBI BioProject Accession PRJNA535891
NCBI Locus Tag
FBV13  
NCBI BioSample Accession SAMN11510512
PI Francis M. MARTIN
Added By JGI automated process on 2018-10-26
Last Modified By JGI automated process on 2019-06-18
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Metatranscriptome of lateral roots formed during interaction between Glonium-Pinus after 60 days of contact  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid RNA
Sequencing Strategy
Metatranscriptome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Mycorrhizal fungal microbial communities from various locations for deep transcriptomics studies
Biosample Pinus sylvestris lateral roots inoculated with Glonium stellatum from greenhouse in Uitikon, Zurich, Switzerland - Myc_Glost_Pine_R2
Analysis Projects
  
Number of Analysis Projects 0
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status In progress
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina NovaSeq
Library Method (MIGS-28)
Illumina RNASeq w/PolyA Selection, Tubes; Illumina Low Input RNASeq w/PolyA Selection, Tubes  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Pinus sylvestris lateral roots inoculated with Glonium stellatum from greenhouse in Uitikon, Zurich, Switzerland - Myc_Glost_Pine_R2
Other Names (alias, synonyms, short names)
  
Sample Description
Lateral roots formed during interaction between Glonium-Pinus after 60 days of contact  
SAMPLE TAXONOMY
NCBI Taxonomy ID 1118232
GOLD CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the SP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?