PROJECT INFORMATION
GOLD Project ID
Gp0344886  
Project Name
Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18
NCBI BioProject Accession PRJNA539147
NCBI Locus Tag
FB868  
NCBI BioSample Accession SAMN11532884
Source Sample ID
PI Jennifer Pett-Ridge
Added By JGI automated process on 2018-10-26
Last Modified By JGI automated process on 2022-09-04
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico. Metagenome - Stable Isotope Probing  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
Restricted  
JGI Award DOI 10.46936/10.25585/60000880
JGI Portal Download Raw Sequence Data
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX5820246  (Link to NCBI )
Experiment Title GRE.SIPMG.066b5f18
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection other
Library Name GAAHO
Library Layout PAIRED
PROJECT COMPOSITION
Study Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico
Biosample Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18
Analysis Projects GRE coassembly MetaHipMer
Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18
Number of Analysis Projects (AP) 2
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina NovaSeq
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18
Other Names (alias, synonyms, short names)
  
Sample Description
Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico. Metagenome - Stable Isotope Probing  
SAMPLE TAXONOMY
NCBI Taxonomy ID 410658
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Tropical forest  
Specific Ecosystem
Bulk soil  

 

 

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