PROJECT INFORMATION
GOLD Project ID
Gp0341844  
Project Name
Schaalia odontolytica NCTC 9935  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name
  
NCBI BioProject Accession PRJEB6403
NCBI Locus Tag
  
NCBI BioSample Accession SAMEA4504037
PI
Added By JGI automated process on 2018-10-19
Last Modified By Supratim Mukherjee on 2019-03-20
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center Wellcome Trust Sanger Institute (United Kingdom)
Collaborating Institute
  
Funding Agency
  
Project Description
Genome sequencing of Schaalia odontolytica NCTC 9935 from Public Health England's National Collection of Type Cultures (NCTC) using long-read PacBio SMRT technology  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id ERX1961452  (Link to NCBI )
Experiment Title PacBio RS sequencing
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name 17993162
Library Layout SINGLE
Library Instrument PAC_BIO_RS
PROJECT COMPOSITION
Study Genome sequencing of bacterial type strains from NCTC culture collection
Organism Schaalia odontolytica NCTC 9935
Analysis Projects Schaalia odontolytica NCTC 9935
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0258840
Organism Name
Schaalia odontolytica NCTC 9935  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Schaalia  
Genus Synonyms
  
Species
Schaalia odontolytica  
Subspecies
  
Species Synonyms
  
Strain
NCTC 9935  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
NCTC 9935  
Type Strain
  
Exemplar DOI
10.1601/ex.5797  
Exemplar Name
Schaalia odontolytica  
Taxon DOI
10.1601/tx.32707  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1660
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinomycetia  
NCBI Order
Actinomycetales  
NCBI Family
Actinomycetaceae  
NCBI Genus
Schaalia  
NCBI Species
Schaalia odontolytica  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 41573
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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