PROJECT INFORMATION
GOLD Project ID
Gp0328581  
Project Name
Xylaria flabelliformis NC1011 Standard Draft  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Xylaria flabelliformis NC1011 Standard Draft
NCBI BioProject ID 519174
NCBI BioProject Accession PRJNA519174
NCBI Locus Tag
EV127  
NCBI BioSample Accession SAMN10872475
PI Jana U'Ren
Added By JGI automated process on 2018-09-22
Last Modified By JGI automated process on 2019-06-17
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Xylaria flabelliformis NC1011 Standard Draft  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX5649020
Experiment Title Xylaria flabelliformis NC1011 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name CWAPT
Library Layout SINGLE
 
SRA Experiment Id SRX5649023
Experiment Title Xylaria flabelliformis NC1011 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name CWAPT
Library Layout SINGLE
 
SRA Experiment Id SRX5649024
Experiment Title Xylaria flabelliformis NC1011 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name CWAPT
Library Layout SINGLE
 
SRA Experiment Id SRX5649021
Experiment Title Xylaria flabelliformis NC1011 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name CWAPT
Library Layout SINGLE
 
SRA Experiment Id SRX5649022
Experiment Title Xylaria flabelliformis NC1011 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name CWAPT
Library Layout SINGLE
 
SRA Experiment Id SRX5649025
Experiment Title Xylaria flabelliformis NC1011 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name CWAPT
Library Layout SINGLE
PROJECT COMPOSITION
Study Exploring the roles of endophytic fungi from Xylariaceae family in lignocellulose degradation, nutrient cycling, and secondary metabolite production
Organism Xylaria flabelliformis NC1011
Analysis Projects Xylaria flabelliformis NC1011 Standard Draft Annotated
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) PacBio Sequel
Library Method (MIGS-28)
Production RnD, Tubes; PacBio >10kb w/ AMPure Bead Size Selection, Tubes  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0460150
Organism Name
Xylaria flabelliformis NC1011  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
FUNGI-ASCOMYCOTA  
Genus
Xylaria  
Genus Synonyms
  
Species
Xylaria flabelliformis  
Subspecies
  
Species Synonyms
  
Strain
NC1011  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
NC1011  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 2512241
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
Fungi  
NCBI Phylum
Ascomycota  
NCBI Class
Sordariomycetes  
NCBI Order
Xylariales  
NCBI Family
Xylariaceae  
NCBI Genus
Xylaria  
NCBI Species
Xylaria flabelliformis  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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