PROJECT INFORMATION
GOLD Project ID
Gp0325336  
Project Name
Elytroderma deformans 183.68 Transcriptome - CBS183.68  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Elytroderma deformans 183.68 Transcriptome - CBS183.68
NCBI BioProject ID 537175
NCBI BioProject Accession PRJNA537175
NCBI Locus Tag
  
NCBI BioSample Accession SAMN11512150
PI Richard Hamelin
Added By JGI automated process on 2018-08-15
Last Modified By JGI automated process on 2019-04-26
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Elytroderma deformans 183.68 Transcriptome. Growth on malt extract agar and mininal medium with skim milk  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid RNA
Sequencing Strategy
Transcriptome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX6407387  (Link to NCBI )
Experiment Title Elytroderma deformans 183.68 Transcriptome
Exp Library Strategy RNA_SEQ
Library Source TRANSCRIPTOMIC
Library Selection RT-PCR
Library Name CWYAO
Library Layout PAIRED
PROJECT COMPOSITION
Study Genome and transcriptome sequencing of fungal pathogens from poplar and pine trees
Organism Elytroderma deformans CBS 183.68
Analysis Projects
  
Number of Analysis Projects (AP) 0
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina NovaSeq
Library Method (MIGS-28)
Illumina RNASeq w/PolyA Selection, Tubes  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0446215
Organism Name
Elytroderma deformans CBS 183.68  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
FUNGI-ASCOMYCOTA  
Genus
Elytroderma  
Genus Synonyms
  
Species
Elytroderma deformans  
Subspecies
  
Species Synonyms
  
Strain
CBS 183.68  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
CBS 183.68  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 128019
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
Fungi  
NCBI Phylum
Ascomycota  
NCBI Class
Leotiomycetes  
NCBI Order
Rhytismatales  
NCBI Family
Rhytismataceae  
NCBI Genus
Elytroderma  
NCBI Species
Elytroderma deformans  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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