PROJECT INFORMATION
GOLD Project ID
Gp0323288  
Project Name
Formosa haliotis MA1  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Formosa haliotis MA1 genome sequencing
NCBI BioProject Accession PRJDB4855
NCBI Locus Tag
A9D35  
NCBI BioSample Accession SAMD00052035
PI
Added By JGI automated process on 2018-07-12
Last Modified By Mahathi Kandimalla on 2020-07-23
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Environmental
Sequencing Center Mie University
Collaborating Institute
  
Funding Agency
  
Project Description
Formosa haliotis MA1 genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications International Journal of Systematic and Evolutionary Microbiology 65(12):4388-93 Formosa haliotis sp. nov., a brown-alga-degrading bacterium isolated from the gut of the abalone Haliotis gigantea.

Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Formosa haliotis MA1 genome sequencing
Organism Formosa haliotis MA1
Analysis Projects Formosa haliotis MA1
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) PacBio RS II
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
34  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0454962
Organism Name
Formosa haliotis MA1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
BACTEROIDETES  
Genus
Formosa  
Genus Synonyms
  
Species
Formosa haliotis  
Subspecies
  
Species Synonyms
  
Strain
MA1  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
LMG 28520  
Type Strain
Yes  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1555194
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Bacteroidetes  
NCBI Class
Flavobacteriia  
NCBI Order
Flavobacteriales  
NCBI Family
Flavobacteriaceae  
NCBI Genus
Formosa  
NCBI Species
Formosa haliotis  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Algae  
Ecosystem Type
Brown Algae  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID LC005522
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
Halophile  
pH
6  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Algae
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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