PROJECT INFORMATION
GOLD Project ID
Gp0317674  
Project Name
Sulfolobus acidocaldarius 98-3 transcriptome - 65_1.6_stat_C.2  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Sulfolobus acidocaldarius 98-3 transcriptome - 65_1.6_stat_C.2
NCBI BioProject ID 585296
NCBI BioProject Accession PRJNA585296
NCBI Locus Tag
  
NCBI BioSample Accession SAMN13170787
PI Zhirui Zeng
Added By JGI automated process on 2018-06-01
Last Modified By JGI automated process on 2019-11-04
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Transcriptomics study of glycerol dialkyl glycerol tetraethers (GDGTs) synthesis in hyperthermophilic archaea. Cells grown at a pH of 1.6 at 65C  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid RNA
Sequencing Strategy
Transcriptome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Transcriptomics to determine the mechanism of membrane tetraether lipid biosynthesis in archaea
Organism Sulfolobus acidocaldarius 98-3
Analysis Projects
  
Number of Analysis Projects 0
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina NextSeq-HO
Library Method (MIGS-28)
Illumina Low Input RNASeq w/rRNA Depletion, Tubes  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
37  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0032038
Organism Name
Sulfolobus acidocaldarius 98-3  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
ARCHAEAL  
Phylogeny
CRENARCHAEOTA-THERMOPROTEI  
Genus
Sulfolobus  
Genus Synonyms
  
Species
Sulfolobus acidocaldarius  
Subspecies
  
Species Synonyms
  
Strain
98-3  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 639  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.67  
Exemplar Name
Sulfolobus acidocaldarius  
Taxon DOI
10.1601/tx.67  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 2285
NCBI Superkingdom
Archaea  
NCBI Kingdom
  
NCBI Phylum
Crenarchaeota  
NCBI Class
Thermoprotei  
NCBI Order
Sulfolobales  
NCBI Family
Sulfolobaceae  
NCBI Genus
Sulfolobus  
NCBI Species
Sulfolobus acidocaldarius  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Thermal springs  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 156881
Genbank 16S ID D14053
GENERAL PROPERTIES
Oxygen Requirement
Obligate aerobe  
Cell Shape
Coccus-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Thermophile  
Salinity
  
pH
1  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases
  
Known Habitats Hot spring
Aquatic
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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