PROJECT INFORMATION
GOLD Project ID
Gp0317094  
Project Name
Pan troglodytes Yerkes chimp pedigree #C0471 (Clint)  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Pan troglodytes Yerkes chimp pedigree #C0471 (Clint) genome sequencing
NCBI BioProject ID 13184
NCBI BioProject Accession PRJNA13184
NCBI Locus Tag
  
NCBI BioSample Accession SAMN06272697
PI
Added By JGI automated process on 2018-05-24
Last Modified By JGI automated process on 2018-07-16
Project Comments
  
Project Status
Complete and Published  
Project Relevance
  
Sequencing Center Washington University Genome Sequencing Center
Broad Institute (USA)
Chimpanzee Sequencing Consortium
Chimpanzee Sequencing and Analysis Consortium
Collaborating Institute
  
Funding Agency
  
Project Description
Pan troglodytes Yerkes chimp pedigree #C0471 (Clint) genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX2573238
Experiment Title WGS_Pan_troglodytes_cell_line: Sample Clint.2_35kb
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Clint.2_35kb
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX2573543
Experiment Title WGS_Pan_troglodytes_cell_line: Sample Clint_ptr
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Clint_ptr
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX2573291
Experiment Title WGS_Pan_troglodytes_cell_line: Sample Clint.5_40kb.SS
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Clint.5_40kb.SS
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX2573292
Experiment Title WGS_Pan_troglodytes_cell_line: Sample Clint.6_40kb.SS
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Clint.6_40kb.SS
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX2573525
Experiment Title WGS_Pan_troglodytes_cell_line: Sample Clint.9_75kb.SS
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Clint.9_75kb.SS
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX2573290
Experiment Title WGS_Pan_troglodytes_cell_line: Sample Clint.4_40kb.SS
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Clint.4_40kb.SS
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX2573509
Experiment Title WGS_Pan_troglodytes_cell_line: Sample Clint.8_75kb.SS
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Clint.8_75kb.SS
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX2573260
Experiment Title WGS_Pan_troglodytes_cell_line: Sample Clint.3_40kb
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Clint.3_40kb
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX2573508
Experiment Title WGS_Pan_troglodytes_cell_line: Sample Clint.7_45kb.SS
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Clint.7_45kb.SS
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
PROJECT COMPOSITION
Study Pan troglodytes Yerkes chimp pedigree #C0471 (Clint) genome sequencing
Organism Pan troglodytes Yerkes chimp pedigree #C0471 (Clint)
Analysis Projects Pan troglodytes Yerkes chimp pedigree #C0471 (Clint)
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) PacBio RS
Illumina NextSeq 500
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0452657
Organism Name
Pan troglodytes Yerkes chimp pedigree #C0471 (Clint)  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
CHORDATA  
Genus
Pan  
Genus Synonyms
  
Species
Pan troglodytes  
Subspecies
  
Species Synonyms
  
Strain
Yerkes chimp pedigree #C0471 (Clint)  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 9598
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
Metazoa  
NCBI Phylum
Chordata  
NCBI Class
Mammalia  
NCBI Order
Primates  
NCBI Family
Hominidae  
NCBI Genus
Pan  
NCBI Species
Pan troglodytes  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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