PROJECT INFORMATION
GOLD Project ID
Gp0313368  
Project Name
Agromyces sp. MF30-A  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Agromyces sp. MF30-A genome sequencing
NCBI BioProject ID 431336
NCBI BioProject Accession PRJNA431336
NCBI Locus Tag
DCE93  
NCBI BioSample Accession SAMN08932545
PI
Added By JGI automated process on 2018-05-24
Last Modified By Mahathi Kandimalla on 2020-06-23
Project Comments
  
Project Status
Complete and Published  
Project Relevance
  
Sequencing Center Chinese Center for Disease Control and Prevention (China CDC) China (China)
Collaborating Institute
  
Funding Agency
  
Project Description
Finding the novel species of bacteria from Pika feces  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications International Journal of Systematic and Evolutionary Microbiology 70(4):2247-2253 ).

Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Agromyces sp. MF30-A genome sequencing
Organism Agromyces sp. MF30-A
Analysis Projects Agromyces sp. MF30-A
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) PacBio RS
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
70  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0448978
Organism Name
Agromyces sp. MF30-A  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Agromyces  
Genus Synonyms
  
Species
Agromyces sp. MF30-A  
Subspecies
  
Species Synonyms
  
Strain
MF30-A  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
CGMCC 1.16469  
Type Strain
Yes  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 2080742
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Micrococcales  
NCBI Family
Microbacteriaceae  
NCBI Genus
Agromyces  
NCBI Species
Agromyces sp. MF30-A  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Mammals  
Ecosystem Type
Gastrointestinal tract  
Ecosystem Subtype
Intestine  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID MG461699
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
  
Temperature Range
  
Salinity
Halotolerant  
pH
6  
Cell Diameter
0.2–0.9 µm  
Cell Length
1.0–3.0 µm  
Color
Yellow  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Mammalian gastrointestinal tract
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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