PROJECT INFORMATION
GOLD Project ID
Gp0305117  
Project Name
Parageobacillus toebii DSM 14590  
Other Names
Geobacillus toebii DSM 14590  
Legacy GOLD ID
  
NCBI BioProject Name Parageobacillus toebii DSM 14590
NCBI BioProject ID 455457
NCBI BioProject Accession PRJNA455457
NCBI Locus Tag
DER53  
NCBI BioSample Accession SAMN09062732
PI Adam Guss
Added By Supratim Mukherjee on 2018-03-21
Last Modified By JGI automated process on 2020-08-22
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Genome sequencing of Parageobacillus toebii DSM 14590 to determine microbial DNA methylation  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX4823099  (Link to NCBI )
Experiment Title Geobacillus toebii DSM 14590
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name CNNZY
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX4823098  (Link to NCBI )
Experiment Title Geobacillus toebii DSM 14590
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name CNNZY
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
PROJECT COMPOSITION
Study PacBio sequencing to determine microbial DNA methylation
Organism Parageobacillus toebii DSM 14590
Analysis Projects Parageobacillus toebii DSM 14590
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 3: Improved-High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) PacBio RS II
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0411527
Organism Name
Parageobacillus toebii DSM 14590  
Other names (alias, synonyms, short names, common names)
Geobacillus toebii DSM 14590  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Parageobacillus  
Genus Synonyms
  
Species
Parageobacillus toebii  
Subspecies
  
Species Synonyms
  
Strain
DSM 14590  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 14590  
Type Strain
  
Exemplar DOI
10.1601/ex.5032  
Exemplar Name
Parageobacillus toebii  
Taxon DOI
10.1601/tx.33175  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1223503
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Bacilli  
NCBI Order
Bacillales  
NCBI Family
Bacillaceae  
NCBI Genus
Parageobacillus  
NCBI Species
Parageobacillus toebii  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Solid waste  
Ecosystem Type
Agricultural waste  
Ecosystem Subtype
Composting  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
Rod-shaped  
Motility
  
Sporulation
  
Temperature Range
Thermophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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