PROJECT INFORMATION
GOLD Project ID
Gp0305077  
Project Name
Melampsora medusae f. sp. tremuloidae Mmt05Ida529 Standard Draft  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Melampsora medusae f. sp. tremuloidae Mmt05Ida529 Standard Draft
NCBI BioProject Accession PRJNA538401
NCBI Locus Tag
FB569  
NCBI BioSample Accession SAMN11512246
PI Richard Hamelin
Added By JGI automated process on 2018-03-16
Last Modified By JGI automated process on 2020-08-22
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Pathobiome of bioenergy trees  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX5786629  (Link to NCBI )
Experiment Title Melampsora medusae f. sp. tremuloidae Mmt05Ida529 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name COGZH
Library Layout SINGLE
 
SRA Experiment Id SRX5786633  (Link to NCBI )
Experiment Title Melampsora medusae f. sp. tremuloidae Mmt05Ida529 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name COGZH
Library Layout SINGLE
 
SRA Experiment Id SRX5786632  (Link to NCBI )
Experiment Title Melampsora medusae f. sp. tremuloidae Mmt05Ida529 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name COGZH
Library Layout SINGLE
 
SRA Experiment Id SRX5786631  (Link to NCBI )
Experiment Title Melampsora medusae f. sp. tremuloidae Mmt05Ida529 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name COGZH
Library Layout SINGLE
 
SRA Experiment Id SRX5786630  (Link to NCBI )
Experiment Title Melampsora medusae f. sp. tremuloidae Mmt05Ida529 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name COGZH
Library Layout SINGLE
PROJECT COMPOSITION
Study Genome and transcriptome sequencing of fungal pathogens from poplar and pine trees
Organism Melampsora medusae f. sp. tremuloidae Mmt05Ida529
Analysis Projects Melampsora medusae f. sp. tremuloidae Mmt05Ida529 Standard Draft
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) PacBio Sequel
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0411504
Organism Name
Melampsora medusae f. sp. tremuloidae Mmt05Ida529  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
FUNGI-BASIDIOMYCOTA  
Genus
Melampsora  
Genus Synonyms
  
Species
Melampsora medusae  
Subspecies
  
Species Synonyms
  
Strain
Mmt05Ida529  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 82101
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
Fungi  
NCBI Phylum
Basidiomycota  
NCBI Class
Pucciniomycetes  
NCBI Order
Pucciniales  
NCBI Family
Melampsoraceae  
NCBI Genus
Melampsora  
NCBI Species
Melampsora medusae  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Phyllosphere  
Ecosystem Subtype
Leaf  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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