PROJECT INFORMATION
GOLD Project ID
Gp0301715  
Project Name
Methanohalophilus portucalensis FDF-1  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Methanohalophilus portucalensis FDF-1 genome sequencing
NCBI BioProject ID 348536
NCBI BioProject Accession PRJNA348536
NCBI Locus Tag
  
NCBI BioSample Accession SAMN05908879
PI
Added By JGI automated process on 2018-03-01
Last Modified By Hema Katta on 2018-09-11
Project Comments
  
Project Status
Complete and Published  
Project Relevance Environmental
Sequencing Center Universite de Bretagne Occidentale
Collaborating Institute
  
Funding Agency
  
Project Description
Methanohalophilus portucalensis FDF-1 genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Genome announcements Complete Genome Sequence of the Halophilic Methylotrophic Methanogen Archaeon Strain FDF-1.

Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX2248240
Experiment Title Draft genome of M.portucalensis
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM PCR
Library Name library-Beckman
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
 
SRA Experiment Id SRX2248239
Experiment Title Draft genome of M.portucalensis
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM PCR
Library Name library-Kaust
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
 
SRA Experiment Id SRX2248238
Experiment Title Draft genome of M.portucalensis
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection size fractionation
Library Name library-Duke
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
PROJECT COMPOSITION
Study Methanohalophilus portucalensis FDF-1 genome sequencing
Organism Methanohalophilus portucalensis FDF-1
Analysis Projects Methanohalophilus portucalensis FDF-1
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina MiSeq
Illumina HiSeq
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0407544
Organism Name
Methanohalophilus portucalensis FDF-1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
ARCHAEAL  
Phylogeny
EURYARCHAEOTA-METHANOMICROBIA  
Genus
Methanohalophilus  
Genus Synonyms
  
Species
Methanohalophilus portucalensis  
Subspecies
  
Species Synonyms
  
Strain
FDF-1  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 7471  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.249  
Exemplar Name
Methanohalophilus portucalensis  
Taxon DOI
10.1601/tx.249  
Biosafety Level
  
Organism Comments
Collected from upper 10 cm sediments  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 39664
NCBI Superkingdom
Archaea  
NCBI Kingdom
  
NCBI Phylum
Euryarchaeota  
NCBI Class
Methanomicrobia  
NCBI Order
Methanosarcinales  
NCBI Family
Methanosarcinaceae  
NCBI Genus
Methanohalophilus  
NCBI Species
Methanohalophilus portucalensis  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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