PROJECT INFORMATION
GOLD Project ID
Gp0290500  
Project Name
Thermohydrogenium kirishiense DSM 11055  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Thermohydrogenium kirishiense DSM 11055
NCBI BioProject ID 500305
NCBI BioProject Accession PRJNA500305
NCBI Locus Tag
EDC21  
NCBI BioSample Accession SAMN10363402
PI Markus Göker
Added By JGI automated process on 2017-12-21
Last Modified By JGI automated process on 2019-09-29
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Genome sequencing as part of The One Thousand Microbial Genomes Phase 4 (KMG IV) project  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX5202805  (Link to NCBI )
Experiment Title Thermohydrogenium kirishiense DSM 11055
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name CTOSS
Library Layout PAIRED
PROJECT COMPOSITION
Study Genomic Encyclopedia of Type Strains, Phase IV (KMG-IV): sequencing the most valuable type-strain genomes for metagenomic binning, comparative biology and taxonomic classification
Organism Thermohydrogenium kirishiense DSM 11055
Analysis Projects Thermohydrogenium kirishiense DSM 11055
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina NovaSeq
Illumina HiSeq 2500-1TB
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Plates  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0031890
Organism Name
Thermohydrogenium kirishiense DSM 11055  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Thermohydrogenium  
Genus Synonyms
  
Species
Thermohydrogenium kirishiense  
Subspecies
  
Species Synonyms
  
Strain
DSM 11055  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 11055  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.4506  
Exemplar Name
Thermohydrogenium kirishiense  
Taxon DOI
10.1601/tx.4506  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 937254
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Clostridia  
NCBI Order
Eubacteriales  
NCBI Family
Syntrophomonadaceae  
NCBI Genus
Thermohydrogenium  
NCBI Species
Thermohydrogenium kirishiense  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Wastewater  
Ecosystem Type
Industrial wastewater  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID FR749963
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Thermophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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