PROJECT INFORMATION
GOLD Project ID
Gp0276695  
Project Name
Fecal microbial communities from pigs exposed to antibiotic carbadox from Iowa, United States - 187_2  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Swine feces metagenome
NCBI BioProject ID 237795
NCBI BioProject Accession PRJNA237795
NCBI Locus Tag
  
NCBI BioSample Accession SAMN02645019
PI
Added By JGI automated process on 2017-12-08
Last Modified By
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center U.S. Department of Agriculture, Agricultural Research Service (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Fecal microbial communities from pigs exposed to antibiotic carbadox from Iowa, United States  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX2664162  (Link to NCBI )
Experiment Title Antibiotic (carbadox) effects on the swine gut microbiota
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection RANDOM
Library Name 187_2_feces_mg
Library Layout SINGLE
Library Instrument 454 GS FLX Titanium
PROJECT COMPOSITION
Study Pig fecal microbial communities from Ames, Iowa, United States
Biosample Fecal microbial communities from pigs exposed to antibiotic carbadox from Iowa, United States - 187_2
Analysis Projects Fecal microbial communities from pigs exposed to antibiotic carbadox from Iowa, United States - 187_2
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Fecal microbial communities from pigs exposed to antibiotic carbadox from Iowa, United States - 187_2
Other Names (alias, synonyms, short names)
  
Sample Description
Fecal samples from pig exposed to antibiotic carbadox amended feed  
SAMPLE TAXONOMY
NCBI Taxonomy ID 749906
GOLD CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Mammals  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Large intestine  
Specific Ecosystem
Fecal  

 

 

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