PROJECT INFORMATION
GOLD Project ID
Gp0255794  
Project Name
Saline water microbial communities from Ace Lake, Antarctica - #1504  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Saline water microbial communities from Ace Lake, Antarctica - #1504
NCBI BioProject ID 467271
NCBI BioProject Accession PRJNA467271
NCBI Locus Tag
DGV90  
NCBI BioSample Accession SAMN09200906
PI Rick Cavicchioli
Added By JGI automated process on 2017-10-23
Last Modified By JGI automated process on 2020-04-04
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Saline water microbial communities from Ace Lake, Antarctica  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications Microbiome 8(1):116 Influence of the polar light cycle on seasonal dynamics of an Antarctic lake microbial community.

Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX4397538  (Link to NCBI )
Experiment Title Antarctic Ace Lake metagenome #1504
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection RANDOM
Library Name CGNPO
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
PROJECT COMPOSITION
Study Saline lake microbial communities from various lakes in Antarctica
Biosample Saline water microbial communities from Ace Lake, Antarctica - #1504
Analysis Projects Saline water microbial communities from Ace Lake, Antarctica - #1504
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500-1TB
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Plates  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Saline water microbial communities from Ace Lake, Antarctica - #1504
Other Names (alias, synonyms, short names)
  
Sample Description
Saline water microbial communities from Ace Lake, Antarctica  
SAMPLE TAXONOMY
NCBI Taxonomy ID 903395
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Non-marine Saline and Alkaline  
Ecosystem Subtype
Saline  
Specific Ecosystem
  

 

 

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