PROJECT INFORMATION
GOLD Project ID
Gp0255703  
Project Name
Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR46.Redo.05.C16  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR46.Redo.05.C16
NCBI BioProject ID 467185
NCBI BioProject Accession PRJNA467185
NCBI Locus Tag
DGV03  
NCBI BioSample Accession SAMN09202323
PI Mark Dopson
Added By JGI automated process on 2017-10-23
Last Modified By JGI automated process on 2020-04-04
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Sorted cells from the Olkiluoto Island deep subsurface site groundwater, Finland  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome - Single Particle Sort  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX4391262  (Link to NCBI )
Experiment Title uncultured microorganism JGI SbSrfc.KR46.Redo.05.C16
Exp Library Strategy OTHER
Library Source METAGENOMIC
Library Selection other
Library Name CHPCU
Library Layout PAIRED
Library Instrument NEXT_SEQ_500
PROJECT COMPOSITION
Study Groundwater microbial communities from three deep subsurface sites in Europe
Biosample Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR46.Redo.05.C16
Analysis Projects Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR46.Redo.05.C16
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina NextSeq-HO
Library Method (MIGS-28)
Illumina Nextera with Size Selection, Plates  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR46.Redo.05.C16
Other Names (alias, synonyms, short names)
  
Sample Description
Sorted cells from the Olkiluoto Island deep subsurface site groundwater, Finland  
SAMPLE TAXONOMY
NCBI Taxonomy ID 717931
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
Groundwater  
Specific Ecosystem
  

 

 

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