PROJECT INFORMATION
GOLD Project ID
Gp0239808  
Project Name
Anaeromyces sp. S4 Gene Expression Profiling - MAO_S4pulse_49 - 2 h - glucose  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Anaeromyces sp. S4 Gene Expression Profiling - MAO_S4pulse_49 - 2 h - glucose
NCBI BioProject ID 411039
NCBI BioProject Accession PRJNA411039
NCBI Locus Tag
  
NCBI BioSample Accession SAMN07687265
PI Michelle O'Malley
Added By JGI automated process on 2017-09-19
Last Modified By JGI automated process on 2018-10-08
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Transcriptomic Characterization of Anaerobic Gut Fungi. Sample from axenic culture growing on reed canary grass treated with glucose in mid-log phase  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid RNA
Sequencing Strategy
Transcriptome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX3329601  (Link to NCBI )
Experiment Title Anaeromyces sp S4 Gene Expression Profiling
Exp Library Strategy RNA_SEQ
Library Source TRANSCRIPTOMIC
Library Selection other
Library Name AXBWB
Library Layout SINGLE
Library Instrument ILLUMINA_HI_SEQ_2500
PROJECT COMPOSITION
Study Transcriptomic Characterization of Anaerobic Gut Fungi
Organism Anaeromyces sp. S4
Analysis Projects
  
Number of Analysis Projects 0
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500-1TB
Library Method (MIGS-28)
Illumina RNASeq w/PolyA Selection, Plates; Illumina Low Input RNASeq w/PolyA Selection, Plates  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0047510
Organism Name
Anaeromyces sp. S4  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
FUNGI-CHYTRIDIOMYCOTA  
Genus
Anaeromyces  
Genus Synonyms
  
Species
Anaeromyces sp. S4  
Subspecies
  
Species Synonyms
  
Strain
S4  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1754192
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
Fungi  
NCBI Phylum
Chytridiomycota  
NCBI Class
Neocallimastigomycetes  
NCBI Order
Neocallimastigales  
NCBI Family
Neocallimastigaceae  
NCBI Genus
Anaeromyces  
NCBI Species
Anaeromyces robustus  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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